Browse Element(s) Details


Os.54608.1.S1_x_at

Description gb:AK106232.1
DB_XREF= gi:32991441
TID=Os.54608.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B07, full insert sequence.
FL= gb:AK106232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g560009/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified
LOC_Os01g55940Os.12501.1.S1_at11/111+32548226..32551969indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os01g55950Os.9039.1.S1_at11/111+32553005..32556509Acetamidase, putative, expressed
LOC_Os01g55960Os.9039.2.S1_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55960Os.9039.3.S1_x_at11/111+32557560..32559489pentatricopeptide, putative
LOC_Os01g55974Os.54600.1.S1_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54600.1.S1_x_at11/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55974Os.54096.1.S1_at7/111+32559883..32565828deoxycytidylate deaminase, putative, expressed
LOC_Os01g55990OsAffx.23803.1.S1_at11/111+32566985..32567572expressed protein
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54608.1.S1_x_at--981--1211Chr01:32570645..32570669 (25 bp)
AGTTCTATGTTGCAGCCAAATGAGT
LOC_Os01g56000
Os.54608.1.S1_x_at--736--671NONE
ATGACAATGGCCATCTCTAGGCATC
NONE
Os.54608.1.S1_x_at--938--9411Chr01:32571505..32571529 (25 bp)
TCTAGGCATCCATCTTTGAAAGGCT
LOC_Os01g56000
Os.54608.1.S1_x_at--484--2431Chr01:32571548..32571572 (25 bp)
AAAAGCTGTGTGATTCCTGTAGAAC
LOC_Os01g56000
Os.54608.1.S1_x_at--250--7511Chr01:32571577..32571601 (25 bp)
GTGGTTTCAGAGGTATCATCGTGTT
LOC_Os01g56000
Os.54608.1.S1_x_at--981--6791Chr01:32571607..32571631 (25 bp)
GTTTTGGGCTCTTTAACACAACTTG
LOC_Os01g56000
Os.54608.1.S1_x_at--1128--8251Chr01:32571652..32571676 (25 bp)
GGCAGTGAATCATCAGTGCTGGACA
LOC_Os01g56000
Os.54608.1.S1_x_at--589--4871Chr01:32571744..32571768 (25 bp)
GCTTTTGAAAACTGATATCGCTGAT
LOC_Os01g56000
Os.54608.1.S1_x_at--202--6271Chr01:32571847..32571871 (25 bp)
GATGTCAAACTCGATGTCTGCAAGC
LOC_Os01g56000
Os.54608.1.S1_x_at--773--8371Chr01:32571996..32572020 (25 bp)
GGCGAAGCATTCATATTCAGAACCA
LOC_Os01g56000
Os.54608.1.S1_x_at--987--9471NONE
TCTGATCAATGTGGTGCTCATTTCT
NONE
Target Sequence 
AGTTCTATGTTGCAGCCAAATGAGTGNTACATGACAATGGCCATCTCTAGGCATCCATCTTTGAAAGGCTGGATATTATT
GAGGTACAAAAAGCTGTGTGATTCCTGTAGAACTGATGTGGTTTCAGAGGTATCATCGTGTTTAAATGTTTTGGGCTCTT
TAACACAACTTGAAGACAATAAAAGTCACATGGGCAGTGAATCATCAGTGCTGGACAAGATTGATGAAAATTCAGGGGGG
TATTTNCNNCNNNNNNANTTGGCATGTTCATATGAACAGAGAATGCTTTTGAAAACTGATATCGCTGATAGATATGGAGG
GAAAACTGTGCAGAATAAGAATGCACAGATGGTGCATACTGATGAGGTGAAAACTGAGAAGTTAGCAGATGTCAAACTCG
ATGTCTGCAAGCAAGGAAATGTNATTNCTGATGCAGGNCATCAAGCTGCAANACTNGATATGCACACACCAAAATCAACA
CATGATTCTGCTGGGGGAGCTGCAACTCTCACTTCTCCGGGGCAGAATTTTGGAAAGGCGAAGCATTCATATTCAGAACC
ATCTGATCAATGTGGTGCTCATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54608.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis