Browse Element(s) Details


Os.38258.1.S1_x_at

Description gb:AK070278.1
DB_XREF= gi:32980302
TID=Os.38258.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.28 (P0403C05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049F08, full insert sequence.
FL= gb:AK070278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5607011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0045045biological_processsecretory pathway
GO:0016020cellular_componentmembrane
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38258.1.S1_x_at--890--7611Chr01:32604006..32604030 (25 bp)
GGGAACTACACTTTCTCGGCGGCCA
LOC_Os01g56070
Os.38258.1.S1_x_at--1028--3591Chr01:32603966..32603990 (25 bp)
CATTGCTGAGCTTCCAGGTTCATGG
LOC_Os01g56070
Os.38258.1.S1_x_at--1073--9031Chr01:32603914..32603938 (25 bp)
TGCCGCTGGGTTTCCTTACGGGTAT
LOC_Os01g56070
Os.38258.1.S1_x_at--561--8131Chr01:32603889..32603913 (25 bp)
GGACATTCGTTCCATGGCTGGCATG
LOC_Os01g56070
Os.38258.1.S1_x_at--1007--10211Chr01:32603807..32603831 (25 bp)
TATTGCTTGTTCTGGTTGGTGTTCT
LOC_Os01g56070
Os.38258.1.S1_x_at--694--7751Chr01:32603790..32603814 (25 bp)
GGTGTTCTTGTGATTGCCAGCTTGA
LOC_Os01g56070
Os.38258.1.S1_x_at--496--6771Chr01:32603745..32603769 (25 bp)
GTTAGCTATGGCCAATCCTCGGTGA
LOC_Os01g56070
Os.38258.1.S1_x_at--1035--3031Chr01:32603732..32603756 (25 bp)
AATCCTCGGTGATGAGCCTGTATGA
LOC_Os01g56070
Os.38258.1.S1_x_at--1132--211Chr01:32603689..32603713 (25 bp)
ATATTAGGTAGTAGCTCCCACGGGT
LOC_Os01g56070
Os.38258.1.S1_x_at--279--4751Chr01:32603590..32603614 (25 bp)
GCTGATAATGTTGTCGTGCTTCTCG
LOC_Os01g56070
Os.38258.1.S1_x_at--27--4011Chr01:32603576..32603600 (25 bp)
CGTGCTTCTCGATATATTACTTGTG
LOC_Os01g56070
Target Sequence 
GGGAACTACACTTTCTCGGCGGCCATTGGGGGGCTTTTCCCATTGCTGAGCTTCCAGGTTCATGGGTTCCCGCAGGCGGC
GGCGTATGGACCTGCCGCTGGGTTTCCTTACGGGTATGGACATTCGTTCCATGGCTGGCATGGCCATGGTTTCCCGCACC
AGGCACCGCAGGGCCAGCATGTTGATGTGTTCTTGAAGGTATTGCTTGTTCTGGTTGGTGTTCTTGTGATTGCCAGCTTG
ATTGTGTTTTAGATGTGTGCAGTTAGCTATGGCCAATCCTCGGTGATGAGCCTGTATGAAACGGTTTTATTGTGTCAATA
TTAGGTAGTAGCTCCCACGGGTTGATCAGTGTGGAGAGATAGTACAAAGATGATGCTTCAGTAGTTACTAGTAGGATTCT
GTGATAATGAGTGGTAGCTGATAATGTTGTCGTGCTTCTCGATATATTACTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38258.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis