Browse Element(s) Details


Os.12255.1.S1_a_at

Description gb:AK103570.1
DB_XREF= gi:32988779
TID=Os.12255.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0053G03.5 (OSJNBb0053G03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132M15, full insert sequence.
FL= gb:AK103570.1 gb:AK061986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5610011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12255.1.S1_a_at--53--5611Chr01:32629283..32629307 (25 bp)
GACAAGCATCCGATTTCAGTCGCTG
LOC_Os01g56100
Os.12255.1.S1_a_at--802--551Chr01:32629290..32629314 (25 bp)
ATCCGATTTCAGTCGCTGAGGTGGA
LOC_Os01g56100
Os.12255.1.S1_a_at--986--351Chr01:32629316..32629340 (25 bp)
ATAATAGACAAGTCCGTGGTTGAAG
LOC_Os01g56100
Os.12255.1.S1_a_at--151--6011Chr01:32629361..32629385 (25 bp)
GAGACCAAGAGTATACCTTCTGACT
LOC_Os01g56100
Os.12255.1.S1_a_at--1033--6071Chr01:32629369..32629393 (25 bp)
GAGTATACCTTCTGACTCTGAGAAG
LOC_Os01g56100
Os.12255.1.S1_a_at--53--2951Chr01:32629391..32629415 (25 bp)
AAGGCTAATCTGCATATCACCTCGG
LOC_Os01g56100
Os.12255.1.S1_a_at--148--9491Chr01:32629399..32629423 (25 bp)
TCTGCATATCACCTCGGACGATGAT
LOC_Os01g56100
Os.12255.1.S1_a_at--288--791Chr01:32629452..32629476 (25 bp)
ATGTGGCTCCTGTGTCCAGCAAAAC
LOC_Os01g56100
Os.12255.1.S1_a_at--403--3491Chr01:32629476..32629500 (25 bp)
CAGGCAACGTCAATTCAGCAGGGCA
LOC_Os01g56100
Os.12255.1.S1_a_at--330--3411Chr01:32629491..32629515 (25 bp)
CAGCAGGGCAGGAGGAAGACATATC
LOC_Os01g56100
Os.12255.1.S1_a_at--320--1411Chr01:32629507..32629531 (25 bp)
AGACATATCCTTCAGTGATCTGGAG
LOC_Os01g56100
Target Sequence 
GACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGA
GACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACT
GGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGT
GATCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12255.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis