Browse Element(s) Details


OsAffx.11619.1.S1_at

Description gb:NM_191379.1
DB_XREF= gi:34909841
GEN=OSJNBb0053G03.2
TID=OsAffx.11619.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0053G03.2 (OSJNBb0053G03.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5608011/11expressed protein
LOC_Os02g397101/11CONSTANS-like protein CO5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11619.1.S1_at--576--5971Chr01:32616568..32616592 (25 bp)
GAGAAGCCAATTCGACGCAGCGCGC
LOC_Os01g56080
OsAffx.11619.1.S1_at--630--2651Chr01:32616565..32616589 (25 bp)
AAGCCAATTCGACGCAGCGCGCGCG
LOC_Os01g56080
OsAffx.11619.1.S1_at--268--4152Chr02:23984120..23984321 (25 bp)
CGCGGGCGTGCGACTCGGCCTGCGA
LOC_Os02g39710
OsAffx.11619.1.S1_at--685--9151Chr01:32616438..32616462 (25 bp)
TGCGACCTCTACGTGCGCGGCATGT
LOC_Os01g56080
OsAffx.11619.1.S1_at--1057--9931Chr01:32616429..32616453 (25 bp)
TACGTGCGCGGCATGTCCGGGTGCG
LOC_Os01g56080
OsAffx.11619.1.S1_at--798--4911Chr01:32616419..32616443 (25 bp)
GCATGTCCGGGTGCGCGGGCCGCGT
LOC_Os01g56080
OsAffx.11619.1.S1_at--878--3231Chr01:32616229..32616253 (25 bp)
CAAGAAGGTTGGGTATTATCGCGAG
LOC_Os01g56080
OsAffx.11619.1.S1_at--985--7891Chr01:32616223..32616247 (25 bp)
GGTTGGGTATTATCGCGAGGCGCCG
LOC_Os01g56080
OsAffx.11619.1.S1_at--967--6051Chr01:32616099..32616123 (25 bp)
GAGTTCGTCGCGGACACCACGCTGA
LOC_Os01g56080
OsAffx.11619.1.S1_at--506--7231Chr01:32616093..32616117 (25 bp)
GTCGCGGACACCACGCTGAAGGCCA
LOC_Os01g56080
OsAffx.11619.1.S1_at--391--7571Chr01:32616052..32616076 (25 bp)
GGGCGCCTCGGCAGACGGCCTAGCG
LOC_Os01g56080
Target Sequence 
GAGAAGCCAATTCGACGCAGCGCGCGCGGAGCGGCCGGAGCGGAGAGAGATGAAGAAGAAGGGCGGGAGCGGCGGCGGCG
GGTGCCTGGGGGCGCCGTTCCGGGCGCTGTCGCGGGCGTGCGACTCGGCCTGCGACCTCTACGTGCGCGGCATGTCCGGG
TGCGCGGGCCGCGTGCCGGCGGCGATGGAGGCCGTCGCGGTCGGCCGCGGGTTCGGCAGGCCGGCGACCGCGACGGCGAC
GATGCGCCTGCGGGGGCTGAGCTCCCGCGACGTCGACGACCTCGTCCGCGCCGCGTCGAGGCAGCGGCGCGTCGCGGCCG
AGCCGGCGGTGGGGGCAGCCAAGAAGGTTGGGTATTATCGCGAGGCGCCGGCGGGGAAGAAGGGGCCCTTCGAGGAGGCG
GCGGCCGCCGTCCCGGCGCCGAGGAAGAAGGGCGCGGCGATGGGGACCATCGCCGAGGACGCGCCGTGCGAGTTCGTCGC
GGACACCACGCTGAAGGCCACGCCGCCGGTGAGGCGGGGCGCCTCGGCAGACGGCCTAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis