Browse Element(s) Details


OsAffx.23804.3.S1_at

Description tigr:9629.m05488
TID=OsAffx.23804.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g561209/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23804.3.S1_at--299--8551NONE
TGGAGGTTGTGGTCCCCACTAGCGT
NONE
OsAffx.23804.3.S1_at--148--7491Chr01:32638654..32638678 (25 bp)
GTGGTCCCCACTAGCGTCTTGCTTT
LOC_Os01g56120
OsAffx.23804.3.S1_at--1106--10531Chr01:32638672..32638696 (25 bp)
TTGCTTTCCCCGAGAGGCAAAGACG
LOC_Os01g56120
OsAffx.23804.3.S1_at--410--3671Chr01:32638675..32638699 (25 bp)
CTTTCCCCGAGAGGCAAAGACGTTG
LOC_Os01g56120
OsAffx.23804.3.S1_at--257--6191Chr01:32638685..32638709 (25 bp)
GAGGCAAAGACGTTGGGCCCAAGCC
LOC_Os01g56120
OsAffx.23804.3.S1_at--372--4531NONE
GCCCCCAACTTTCGCGTCGGAGGAG
NONE
OsAffx.23804.3.S1_at--40--6151Chr01:32639966..32639990 (25 bp)
GAGGTGGTGAGGTTCCGCCTCAAAA
LOC_Os01g56120
OsAffx.23804.3.S1_at--1154--6151Chr01:32639974..32639998 (25 bp)
GAGGTTCCGCCTCAAAACTCAGCGA
LOC_Os01g56120
OsAffx.23804.3.S1_at--264--6711Chr01:32639977..32640001 (25 bp)
GTTCCGCCTCAAAACTCAGCGATGT
LOC_Os01g56120
OsAffx.23804.3.S1_at--1140--4451Chr01:32639982..32640006 (25 bp)
GCCTCAAAACTCAGCGATGTATCTT
LOC_Os01g56120
OsAffx.23804.3.S1_at--404--2391Chr01:32639988..32640012 (25 bp)
AAACTCAGCGATGTATCTTCAAGCA
LOC_Os01g56120
Target Sequence 
TGGAGGTTGTGGTCCCCACTAGCGTCTTGCTTTCCCCGAGAGGCAAAGACGTTGGGCCCAAGCCCCCAACTTTCGCGTCG
GAGGAGTCCGCAGCGAGGGCGCTCAAGAAGGACAGGCACTTCCTCTATGGCCAGTGGGTGGAGGTGAGCCTTGCAATGCC
CAAGCAGCAGAATGCAACTTCTGGCACTAGCAAATTGCCAGTTCAGGCTCACCCGTTTTATCCAACGACATCATCAAACT
TTACCGCCGCCGCTAATTATCCCAACGTCGTTAATATTGTCCATGTGGTGACACCTATGAATTGTGTCGTCGGCAGTACT
TTTAACCCTCATATTGGCTTCGAGGTACCTGGGATGAAACTGAGTGATGGTGTGATCAATGTTGTCACTGCTAATTACTC
CTACCAGTACCCCTACCTTGGAGGTGGTGAGGTTCCGCCTCAAAACTCAGCGATGTATCTTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23804.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis