Browse Element(s) Details


Os.14210.1.S1_at

Description gb:BI805326
DB_XREF= gi:15852530
DB_XREF=S035E08
CLONE=S035E08
TID=Os.14210.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015K05.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3636011/11expressed protein
LOC_Os01g561301/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36390OsAffx.30689.1.S1_at9/1110+19120091..19124912multi-copper oxidase type I family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14210.1.S1_at--986--5751Chr10:19096271..19096295 (25 bp)
GACGTGATCCTCGTCGGGTTCGCCG
LOC_Os10g36360
Os.14210.1.S1_at--12--7211Chr10:19096235..19096259 (25 bp)
GTCGTCGTCTTCTGGTACATCAGGA
LOC_Os10g36360
Os.14210.1.S1_at--1--7031Chr10:19096221..19096245 (25 bp)
GTACATCAGGATTACCAGGAAGAAC
LOC_Os10g36360
Os.14210.1.S1_at--684--5411Chr10:19096127..19096151 (25 bp)
GAACCACCAGCTGTGGTAGTAGAAG
LOC_Os10g36360
Os.14210.1.S1_at--1135--2831Chr10:19096105..19096129 (25 bp)
AAGTAGCGGCTTAGATTCAGAGGAT
LOC_Os10g36360
Os.14210.1.S1_at--1138--6811Chr10:19096047..19096069 (23 bp)
GTTTAATCTGGTTGTGATGCGCATC
LOC_Os10g36360
Os.14210.1.S1_at--707--7391Chr10:19096031..19096056 (25 bp)
GTGATGCGCATCAAGAACAGAGATA
LOC_Os10g36360
Os.14210.1.S1_at--619--9052Chr10:19095992..19096016 (25 bp)
TGCATAGTTGCATATTTAGTCGTTG
LOC_Os10g36360
Os.14210.1.S1_at--793--4951Chr10:19095983..19096007 (25 bp)
GCATATTTAGTCGTTGCTGGTTAAA
LOC_Os10g36360
Os.14210.1.S1_at--663--9451Chr10:19095928..19095952 (25 bp)
TCTGGTAAATCTGCTAGCTTTGTGA
LOC_Os10g36360
Os.14210.1.S1_at--122--1571Chr10:19095913..19095937 (25 bp)
AGCTTTGTGATGTACATGTCTGTCA
LOC_Os10g36360
Target Sequence 
GACGTGATCCTCGTCGGGTTCGCCGCCGCCGTGGTGGTCGTCGTCTTCTGGTACATCAGGATTACCAGGAAGAACAGCAG
CAGCGGCGGCGGCGGCGGCGNNNNNNNNNNNNTCGAAGCGGCGAGGAAGCTTGAGATACTCAAAGAACCACCAGCTGTGG
TAGTAGAAGTAGCGGCTTAGATTCAGAGGATGAGATGAGATGAGATGAAATCAGATGAAATGTATAGTTTAATCTGGTTG
TGATGCGCATCAAGAACAGAGATAATGAGTAGATTAGATGCATAGTTGCATATTTAGTCGTTGCTGGTTAAAAAAAGAAG
AAGAGGAAGAGGTGTTGATTAGTCTGGTAAATCTGCTAGCTTTGTGATGTACATGTCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis