Browse Element(s) Details


OsAffx.18532.1.S1_at

Description tigr:9638.m03229
TID=OsAffx.18532.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3631011/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18532.1.S1_at--88--1631Chr10:19078751..19078775 (25 bp)
AGCTGGCGCGCGAGGTCAGCCACCT
LOC_Os10g36310
OsAffx.18532.1.S1_at--1055--5451Chr10:19078722..19078746 (25 bp)
GAACTAGACGGATCCCTGTGCGCGG
LOC_Os10g36310
OsAffx.18532.1.S1_at--1007--8391Chr10:19078607..19078631 (25 bp)
GGCGCTGCCGCATCAGCTTGACGAG
LOC_Os10g36310
OsAffx.18532.1.S1_at--445--10751Chr10:19078590..19078614 (25 bp)
TTGACGAGCCTAGAGCGGCCGATGA
LOC_Os10g36310
OsAffx.18532.1.S1_at--990--4471Chr10:19078490..19078514 (25 bp)
GCCGGCACAAGGTGTACGCCTACGA
LOC_Os10g36310
OsAffx.18532.1.S1_at--742--5031Chr10:19078460..19078484 (25 bp)
GCAGCAACCGCGTGGACACGGTGTT
LOC_Os10g36310
OsAffx.18532.1.S1_at--229--8531Chr10:19078448..19078472 (25 bp)
TGGACACGGTGTTCTCGATGCACCA
LOC_Os10g36310
OsAffx.18532.1.S1_at--162--9391Chr10:19078434..19078458 (25 bp)
TCGATGCACCACTGGGTGGACGTGC
LOC_Os10g36310
OsAffx.18532.1.S1_at--602--7511Chr10:19078407..19078431 (25 bp)
GTGGAGCCGGCCCTGATGCTCAACA
LOC_Os10g36310
OsAffx.18532.1.S1_at--1054--8851Chr10:19078394..19078418 (25 bp)
TGATGCTCAACATCGCCCTGCACGA
LOC_Os10g36310
OsAffx.18532.1.S1_at--75--6371Chr10:19078239..19078263 (25 bp)
GATCCAAAGCCGGAAGCTTTCCAGA
LOC_Os10g36310
Target Sequence 
AGCTGGCGCGCGAGGTCAGCCACCTCGCCGAACTAGACGGATCCCTGTGCGCGGTGGTGGACCTCCGCCTCGTCGCGGAG
GAGTACGAGCTCTGGACATGGAGCGGCGCCGCCGCACCCAGCTCGCCGTCGGCGTCGTGGTCGCGGCGCTGCCGCATCAG
CTTGACGAGCCTAGAGCGGCCGATGAGGGACGAGCTAGGCCTGGGGCTCCGCGTCCTCCCGCTCTGCACGTCGCCGGACG
GGAAGGTCCTGCTGGCCACGAGCCGGCACAAGGTGTACGCCTACGACGCCGGCAGCAACCGCGTGGACACGGTGTTCTCG
ATGCACCACTGGGTGGACGTGCCCGTGGAGCCGGCCCTGATGCTCAACATCGCCCTGCACGAGGAAAGCGTCGTCGCCGT
CGGCGGCGGGCGCCGCCGCCGCGGCGACGTGGGCCGGCAGCTGAAGATGGAGGTCGGGAAGAGCGGCGTGGTGGTGGGCA
AGCGAGCGGGACGGCTTGACCGGCACCCGTCCGATCCAAAGCCGGAAGCTTTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis