Browse Element(s) Details


OsAffx.20217.1.S1_at

Description tigr:9638.m03228
TID=OsAffx.20217.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3630011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20217.1.S1_at--1019--6051Chr10:19075261..19075285 (25 bp)
GAGTTGCAATCTTTTGATGACCCAG
LOC_Os10g36300
OsAffx.20217.1.S1_at--589--451Chr10:19075286..19075310 (25 bp)
ATCTCAACTCCGTCATTGCAGTTTG
LOC_Os10g36300
OsAffx.20217.1.S1_at--305--7891Chr10:19075323..19075347 (25 bp)
GGTTCGCGCGTTCATGACACTTCAG
LOC_Os10g36300
OsAffx.20217.1.S1_at--449--5631Chr10:19075338..19075362 (25 bp)
GACACTTCAGCAGCCGTGGTGTAAT
LOC_Os10g36300
OsAffx.20217.1.S1_at--991--6251Chr10:19075389..19075413 (25 bp)
GATGTACTTTGACCGTACTCGTGAC
LOC_Os10g36300
OsAffx.20217.1.S1_at--857--9891Chr10:19075404..19075428 (25 bp)
TACTCGTGACGTGCATTGGATGACT
LOC_Os10g36300
OsAffx.20217.1.S1_at--103--9651Chr10:19075428..19075822 (25 bp)
TCAGGGCACCTGGATGATCGAGACC
LOC_Os10g36300
OsAffx.20217.1.S1_at--421--1391Chr10:19075818..19075842 (25 bp)
AGACCGTGACTCAGCTGCAGTTTGA
LOC_Os10g36300
OsAffx.20217.1.S1_at--263--8571Chr10:19075905..19075929 (25 bp)
TGGATACTTCCACTGCAAAGCTGGG
LOC_Os10g36300
OsAffx.20217.1.S1_at--973--10791Chr10:19075990..19076014 (25 bp)
TTGTTCCACATCTTGCGAAGTCTTT
LOC_Os10g36300
OsAffx.20217.1.S1_at--665--8431Chr10:19076018..19076042 (25 bp)
GGCCTTTGCTCTGCAGAGGCTAAGA
LOC_Os10g36300
Target Sequence 
GAGTTGCAATCTTTTGATGACCCAGATCTCAACTCCGTCATTGCAGTTTGTGAGGAGATGGGGGTTCGCGCGTTCATGAC
ACTTCAGCAGCCGTGGTGTAATGAGATTATCGCTCAGTTTTATGCCACGATGTACTTTGACCGTACTCGTGACGTGCATT
GGATGACTCAGGGCACCTGGATGATCGAGACCGTGACTCAGCTGCAGTTTGAGCATGAGGCACCTCACCCTCAGCTTCAC
CTGCGCCTACTCAAGGTTGACCGCCCCTCTAGGGTGGATACTTCCACTGCAAAGCTGGGGACATTCCCTCCACTTCAACT
CAGCCACATGCTCCTGTGGCTCACCGCGAGCCTTCTTCCTTGTTCCACATCTTGCGAAGTCTTTTTTGGCCTTTGCTCTG
CAGAGGCTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis