Browse Element(s) Details


Os.27780.2.S2_a_at

Description gb:AK064891.1
DB_XREF= gi:32974909
TID=Os.27780.2
CNT=40
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0062C05.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K19, full insert sequence.
FL= gb:AK100756.1 gb:AK064891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3626011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27780.2.S2_a_at--402--10391Chr10:19051582..19051606 (25 bp)
TTTTCTGTAGACAACATCTCGATGG
LOC_Os10g36260
Os.27780.2.S2_a_at--990--451Chr10:19051597..19051729 (25 bp)
ATCTCGATGGCACTTAGAACTATGT
LOC_Os10g36260
Os.27780.2.S2_a_at--1011--5651Chr10:19051756..19051780 (25 bp)
GACATGGAGGCCTTTCTTGGCCTTG
LOC_Os10g36260
Os.27780.2.S2_a_at--931--10831Chr10:19051772..19051796 (25 bp)
TTGGCCTTGTTTTGCAGTTCAGCAA
LOC_Os10g36260
Os.27780.2.S2_a_at--554--3651Chr10:19051798..19051822 (25 bp)
CTTCTCTGTGAGACCGATTTCATCG
LOC_Os10g36260
Os.27780.2.S2_a_at--124--4051Chr10:19051812..19051836 (25 bp)
CGATTTCATCGAGGCTGTCAACGGA
LOC_Os10g36260
Os.27780.2.S2_a_at--661--8991Chr10:19051908..19051932 (25 bp)
TGAAGCAAGCGTACACCCTGGAATC
LOC_Os10g36260
Os.27780.2.S2_a_at--183--10511Chr10:19052074..19052098 (25 bp)
TTCAAGCTTTCATCTGGAGGCGTCT
LOC_Os10g36260
Os.27780.2.S2_a_at--213--911Chr10:19052091..19052115 (25 bp)
AGGCGTCTCTGTCCTGGAGTACGAA
LOC_Os10g36260
Os.27780.2.S2_a_at--407--4811Chr10:19052126..19052150 (25 bp)
GCTCTGTTGCCTCGAGGGCACTGAA
LOC_Os10g36260
Os.27780.2.S2_a_at--161--8251Chr10:19052142..19052166 (25 bp)
GGCACTGAAGCTGATCCTCGGTGTA
LOC_Os10g36260
Target Sequence 
TTTTCTGTAGACAACATCTCGATGGCACTTAGAACTATGTATCAGACAGACAATCTTATAGGGGAGGACATGGAGGCCTT
TCTTGGCCTTGTTTTGCAGTTCAGCAAACTTCTCTGTGAGACCGATTTCATCGAGGCTGTCAACGGAAATGGAATCGGCT
TAAGGAATTTTGTACAGAAGCTGAAATTAATCCTGAAGCAAGCAAATTCACATAGAACTGAAGCAAGCGTACACCCTGGA
ATCAGAAGATCCGCAATTGAGCAGGTCATATGGATGGCGCAACTGAAGCCTGAACCTCACTGCATCGACCATTTCATCGA
CTGCTAAATGCGGGACGATCTGGTGATGGCGCAGCAGACAGCCAGAAGGGCATGGCAAGAGAATTTCAAGCTTTCATCTG
GAGGCGTCTCTGTCCTGGAGTACGAAGAGTCCNTTCGCTCTGTTGCCTCGAGGGCACTGAAGCTGATCCTCGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27780.2.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis