Browse Element(s) Details


OsAffx.30686.1.S1_x_at

Description tigr:9638.m03220
TID=OsAffx.30686.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3622910/11Mov34/MPN/PAD-1 family protein
LOC_Os12g428104/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30686.1.S1_x_at--1040--7111Chr10:19034472..19034496 (25 bp)
GTCTTGAAATTATCCGACCGCATCC
LOC_Os10g36229
OsAffx.30686.1.S1_x_at--743--4971Chr10:19034491..19034515 (25 bp)
GCATCCGCGAGTTCCAGTACCAGGC
LOC_Os10g36229
OsAffx.30686.1.S1_x_at--126--4711Chr10:19034523..19034547 (25 bp)
GCGGCGCGCGTCAGTTACAGCTCCT
LOC_Os10g36229
OsAffx.30686.1.S1_x_at--133--9271Chr10:19034594..19034618 (25 bp)
TCCTCCTACTCGGATGTCTGGGTGC
LOC_Os10g36229
OsAffx.30686.1.S1_x_at--514--9911Chr10:19034600..19034624 (25 bp)
TACTCGGATGTCTGGGTGCGTGATC
LOC_Os10g36229
OsAffx.30686.1.S1_x_at--534--3312Chr12:26566602..26566626 (25 bp)
GACTTGTCCGTTCTCGGGTGGTACT
LOC_Os12g42810
OsAffx.30686.1.S1_x_at--475--9412Chr12:26566615..26566639 (25 bp)
TCGGGTGGTACTCCATTGGGACCAA
LOC_Os12g42810
OsAffx.30686.1.S1_x_at--15--10852Chr12:26566630..26566654 (25 bp)
TTGGGACCAATGTGCACGCCACCGA
LOC_Os12g42810
OsAffx.30686.1.S1_x_at--1116--771Chr10:19034897..19034921 (25 bp)
ATGTGCACGCCACCGACATGGGAAT
LOC_Os10g36229
OsAffx.30686.1.S1_x_at--511--9852Chr12:26566677..26566701 (25 bp)
TACACCGACATGCAAATCCACCAGA
LOC_Os12g42810
OsAffx.30686.1.S1_x_at--817--2271NONE
AAATCCACCAGACAATGATTGCAAA
NONE
Target Sequence 
GTCTTGAAATTATCCGACCGCATCCGCGAGTTCCAGTACCAGGCGGCGGCGGCGGCGCGCGTCAGTTACAGCTCCTCCTC
CTCCTCGTCTTCCGGGACGGCGGCGCCGGAGGATCCTCCTCCTCCTCCTACTCGGATGTCTGGGTGCGTGATCGGGGTTC
GGCGTGACAAGAAGGCCTTCCCCGACTTGTCCGTTCTCGGGTGGTACTCCATTGGGACCAATGTGCACGCCACCGACATG
GGAATCCACCATGGGGACTACACCGACATGCAAATCCACCAGACAATGATTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30686.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis