Browse Element(s) Details


Os.46582.1.S1_at

Description gb:AK062588.1
DB_XREF= gi:32972606
TID=Os.46582.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0062C05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G05, full insert sequence.
FL= gb:AK062588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3618011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36150OsAffx.22492.1.S1_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_x_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36160Os.6845.1.S1_at11/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36160Os.46576.2.S1_x_at1/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36170Os.46576.2.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36170Os.46576.1.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46582.1.S1_at--695--9651Chr10:19018427..19018451 (25 bp)
TCAGCCGAACGTAAGCATGACATGA
LOC_Os10g36180
Os.46582.1.S1_at--339--2671Chr10:19018451..19018475 (25 bp)
AAGCGTTGTAGAAATGGATCCTCTC
LOC_Os10g36180
Os.46582.1.S1_at--1084--8551Chr10:19018465..19018489 (25 bp)
TGGATCCTCTCGTGTGTGTCTGTAT
LOC_Os10g36180
Os.46582.1.S1_at--629--7471Chr10:19018478..19018502 (25 bp)
GTGTGTCTGTATGTTGCCACGTATA
LOC_Os10g36180
Os.46582.1.S1_at--974--2431Chr10:19018519..19018543 (25 bp)
AAAAGTGTCAGTGTGCTTGGAATAA
LOC_Os10g36180
Os.46582.1.S1_at--775--4011Chr10:19018549..19018573 (25 bp)
CGTTATGTACGGCTTTTGTGTCGAT
LOC_Os10g36180
Os.46582.1.S1_at--909--1931Chr10:19018557..19018581 (25 bp)
ACGGCTTTTGTGTCGATGTGCAGTT
LOC_Os10g36180
Os.46582.1.S1_at--869--6811Chr10:19018585..19018609 (25 bp)
GTTTTTTGATGTCTTCTGTGTGTAT
LOC_Os10g36180
Os.46582.1.S1_at--433--3891Chr10:19018600..19018624 (25 bp)
CTGTGTGTATGTAAGCAAGCCCGTT
LOC_Os10g36180
Os.46582.1.S1_at--633--5151Chr10:19018614..19018638 (25 bp)
GCAAGCCCGTTTTGAAAATGGCCAA
LOC_Os10g36180
Os.46582.1.S1_at--5--5532Chr10:19018627..19018651 (25 bp)
GAAAATGGCCAAGTTCAGTTGAAAC
LOC_Os10g36180
Target Sequence 
TCAGCCGAACGTAAGCATGACATGAAGCGTTGTAGAAATGGATCCTCTCGTGTGTGTCTGTATGTTGCCACGTATACACG
TGTAAGTGTAAGAAAAGTGTCAGTGTGCTTGGAATAATAAGCCGTTATGTACGGCTTTTGTGTCGATGTGCAGTTTTTGT
TTTTTGATGTCTTCTGTGTGTATGTAAGCAAGCCCGTTTTGAAAATGGCCAAGTTCAGTTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis