Browse Element(s) Details


Os.51402.1.S2_at

Description gb:AK068656.1
DB_XREF= gi:32978673
TID=Os.51402.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161N11, full insert sequence.
FL= gb:AK068656.1 gb:AK062717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3148411/11expressed protein
LOC_Os10g362291/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31440NANA4+18618289..18619494Zinc knuckle family protein
LOC_Os04g31460Os.51625.1.S1_at10/114+18636414..18637062expressed protein
LOC_Os04g31470OsAffx.3966.1.S1_at11/114+18638500..18639072hypothetical protein
LOC_Os04g31484Os.51402.1.S1_at11/114+18639691..18641815expressed protein
LOC_Os04g31484Os.51402.1.S2_at11/114+18639691..18641815expressed protein
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51402.1.S2_at--1149--4192Chr04:18641296..18641320 (25 bp)
CCCGCCGCTTGTACGACAGAGAAAG
LOC_Os04g31484
Os.51402.1.S2_at--363--9791Chr04:18641380..18641404 (25 bp)
TAAATGGGTCCTATTTGTCGGCGCC
LOC_Os04g31484
Os.51402.1.S2_at--35--10831Chr04:18641394..18641418 (25 bp)
TTGTCGGCGCCAATGTAGAGGTATT
LOC_Os04g31484
Os.51402.1.S2_at--550--2092Chr10:19039146..19039170 (25 bp)
ACATCAGCGTCCGTGTGGCATGCCA
LOC_Os10g36229
Os.51402.1.S2_at--562--5811Chr04:18641556..18641580 (25 bp)
GACCCAGATGGCACAACGATACAAG
LOC_Os04g31484
Os.51402.1.S2_at--1033--651Chr04:18641625..18641649 (25 bp)
ATGCACAGCAGCACAAGGCGGGCCG
LOC_Os04g31484
Os.51402.1.S2_at--606--4671Chr04:18641642..18641666 (25 bp)
GCGGGCCGTGCAGCTTAATTATATT
LOC_Os04g31484
Os.51402.1.S2_at--169--2631Chr04:18641667..18641691 (25 bp)
AACCGTCTCGTGTGCATGTGCTGAA
LOC_Os04g31484
Os.51402.1.S2_at--1016--1651Chr04:18641739..18641763 (25 bp)
AGCCCTTTAGGCAATTGTTCCATGT
LOC_Os04g31484
Os.51402.1.S2_at--444--8811Chr04:18641754..18641778 (25 bp)
TGTTCCATGTTTTCCATCTTTTTCT
LOC_Os04g31484
Os.51402.1.S2_at--1093--431Chr04:18641769..18641793 (25 bp)
ATCTTTTTCTTCCATGCGTTGTTGC
LOC_Os04g31484
Target Sequence 
CCCGCCGCTTGTACGACAGAGAAAGAGAAGAAGAGAAAGGAAAAAAATGAAAGGAGAAAGAGAAAAGGGTGGAAAAGAGA
GTTTTAAATGGGTCCTATTTGTCGGCGCCAATGTAGAGGTATTGATGAGGCCACATCAGCGTCCGTGTGGCATGCCACGT
CAGCGCCACGTAGGATGGCGGAATGGTGGTGGCTATGTTGGACCGGAATGACATACTTTAGCAAGTTCTGGGACTTGAAT
CTGTATTTTTTGATTTCGGAGACCCAGATGGCACAACGATACAAGTTTAGGGACCGGGTGTGTAGTTTACTCTTAATAAA
ACCACACGCATGCACAGCAGCACAAGGCGGGCCGTGCAGCTTAATTATATTAACCGTCTCGTGTGCATGTGCTGAAGAAA
TTACAGTTGGTGAATAACCAAACTCCGAAGGGGTGGAAAATTAAGCCCTTTAGGCAATTGTTCCATGTTTTCCATCTTTT
TCTTCCATGCGTTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51402.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis