Browse Element(s) Details


Os.51402.1.S1_at

Description gb:AK062717.1
DB_XREF= gi:32972735
TID=Os.51402.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C10, full insert sequence.
FL= gb:AK068656.1 gb:AK062717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3148411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31440NANA4+18618289..18619494Zinc knuckle family protein
LOC_Os04g31460Os.51625.1.S1_at10/114+18636414..18637062expressed protein
LOC_Os04g31470OsAffx.3966.1.S1_at11/114+18638500..18639072hypothetical protein
LOC_Os04g31484Os.51402.1.S1_at11/114+18639691..18641815expressed protein
LOC_Os04g31484Os.51402.1.S2_at11/114+18639691..18641815expressed protein
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51402.1.S1_at--649--4011Chr04:18639907..18639931 (25 bp)
CGTCTGGTCGTCCAAAGAGAGCATT
LOC_Os04g31484
Os.51402.1.S1_at--860--9771Chr04:18639934..18639958 (25 bp)
TAAGCACGCACTTAGTCGGGACGGT
LOC_Os04g31484
Os.51402.1.S1_at--744--7331Chr04:18639964..18639988 (25 bp)
GTGCATCCAGGACTGCGCTGGCAAA
LOC_Os04g31484
Os.51402.1.S1_at--828--8431Chr04:18639982..18640006 (25 bp)
TGGCAAAGGTCCAGGCGACCCATAC
LOC_Os04g31484
Os.51402.1.S1_at--440--7991Chr04:18640021..18640045 (25 bp)
GGAGCACTGTAACCGTAGGTATTAC
LOC_Os04g31484
Os.51402.1.S1_at--267--10011Chr04:18640058..18640082 (25 bp)
TAGCTGATCTGCCTTTCTGATCGAC
LOC_Os04g31484
Os.51402.1.S1_at--744--8851Chr04:18640075..18640099 (25 bp)
TGATCGACGCCTTACCGCAGTACAC
LOC_Os04g31484
Os.51402.1.S1_at--469--9891Chr04:18640100..18640124 (25 bp)
TACTACTACATTGGTTCCCCGCATG
LOC_Os04g31484
Os.51402.1.S1_at--13--7331Chr04:18640153..18640177 (25 bp)
GTGCATAGCCGGTATCTAAACTTGT
LOC_Os04g31484
Os.51402.1.S1_at--531--352Chr04:18640178..18640202 (25 bp)
ATAACTGTGTTATTTGAGTCCCCAA
LOC_Os04g31484
Os.51402.1.S1_at--414--1134Chr11:8956883..8956936 (24 bp)
AGTCCCCAAACTCTTAAAATGCATA
NONE
Target Sequence 
CGTCTGGTCGTCCAAAGAGAGCATTGGTAAGCACGCACTTAGTCGGGACGGTGGCCTGTGCATCCAGGACTGCGCTGGCA
AAGGTCCAGGCGACCCATACACACCCCCTGTGACGGAGCACTGTAACCGTAGGTATTACAACCAGGGGTGCTAGCTGATC
TGCCTTTCTGATCGACGCCTTACCGCAGTACACTACTACTACATTGGTTCCCCGCATGCATATGACCGGATTAATAAAAG
AGTAAAGTGCATAGCCGGTATCTAAACTTGTATAACTGTGTTATTTGAGTCCCCAAACTCTTAAAATGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis