Browse Element(s) Details


Os.46582.2.S1_x_at

Description gb:NM_197250.1
DB_XREF= gi:37535859
TID=Os.46582.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0062C05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0062C05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g361806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36150OsAffx.22492.1.S1_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_x_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36160Os.6845.1.S1_at11/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36160Os.46576.2.S1_x_at1/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36170Os.46576.2.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36170Os.46576.1.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46582.2.S1_x_at--315--4491Chr10:19017891..19017915 (25 bp)
GCCGGCTCACAGTCGCAGGACGACG
LOC_Os10g36180
Os.46582.2.S1_x_at--282--7691Chr10:19017982..19018006 (25 bp)
GGGTAACAGTCACCGGCTACATCGC
LOC_Os10g36180
Os.46582.2.S1_x_at--778--1151Chr10:19017989..19018013 (25 bp)
AGTCACCGGCTACATCGCCGACAAG
LOC_Os10g36180
Os.46582.2.S1_x_at--319--971Chr10:19018030..19018054 (25 bp)
AGGACCGCGCGCTCAGCGAGGCCAT
LOC_Os10g36180
Os.46582.2.S1_x_at--286--3211Chr10:19018076..19018100 (25 bp)
CAAGGACGACGTGGCGCAGCGCGTT
LOC_Os10g36180
Os.46582.2.S1_x_at--57--6171Chr10:19018404..19018428 (25 bp)
GAGGAGATCGGCGAGACCCAACGTC
LOC_Os10g36180
Os.46582.2.S1_x_at--967--2571NONE
AACGTCAGCCGAACGAAGTAGCTTA
NONE
Os.46582.2.S1_x_at--618--5431Chr10:19019144..19019164 (21 bp)
GAACGAAGTAGCTTACAAGTGCCAT
NONE
Os.46582.2.S1_x_at--981--6951Chr10:19019147..19019171 (25 bp)
GTAGCTTACAAGTGCCATGAATATT
NONE
Os.46582.2.S1_x_at--913--2851Chr10:19019156..19019180 (25 bp)
AAGTGCCATGAATATTTCGAGGTGC
NONE
Os.46582.2.S1_x_at--1126--3511Chr10:19019162..19019186 (25 bp)
CATGAATATTTCGAGGTGCGAGTGC
NONE
Target Sequence 
GCCGGCTCACAGTCGCAGGACGACGTCGACGCCTCCACCACCCTCGCCTCCGGCGAGCCGGCGACCGGGGGGCAGCAGCA
GCAGGACAAGGGGGTAACAGTCACCGGCTACATCGCCGACAAGCTCCGCCCGGGCGACGAGGACCGCGCGCTCAGCGAGG
CCATCTCCGGCGCGGTGCAGCGGCGCAAGGACGACGTGGCGCAGCGCGTTCCGGCCGTGGCGCCGGCGGCGCCGGGCGAC
ACGATCGCCAAGGTGCGGGAGGCGCCCGCGCAGGTGCTCGCCAAGGCGCGCGACGCCGTCACGTCGCTCACCGGCGGCAC
CCATGTCTCCGACACCGTGCAGCCCACCACCACCACAGAGGCGGATGGCGCGGAGGTGGAATCGGCGCCGGTGATTCGCG
GGGAGGAGATCGGCGAGACCCAACGTCAGCCGAACGAAGTAGCTTACAAGTGCCATGAATATTTCGAGGTGCGAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46582.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis