Browse Element(s) Details


OsAffx.29482.3.S1_x_at

Description tigr:9636.m03306
TID=OsAffx.29482.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3303011/11hypothetical protein
LOC_Os04g389903/11hypothetical protein
LOC_Os05g097202/11hypothetical protein
LOC_Os11g090502/11hypothetical protein
LOC_Os10g362291/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein
LOC_Os08g33030OsAffx.29482.3.S1_x_at11/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.29482.5.S1_x_at4/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_x_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33040NANA8+20379122..20387118retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29482.3.S1_x_at--736--4174Chr05:5484806..5484828 (23 bp)
CCCATGGTCCACATCGGAGCTCGTT
LOC_Os05g09720
OsAffx.29482.3.S1_x_at--985--7631Chr08:20358374..20358398 (25 bp)
GGGACCTCGTCACTTGCGGTCACGT
LOC_Os08g33030
OsAffx.29482.3.S1_x_at--1005--6971Chr08:20358366..20358390 (25 bp)
GTCACTTGCGGTCACGTCCATCGTC
LOC_Os08g33030
OsAffx.29482.3.S1_x_at--1001--7151Chr08:20358225..20358249 (25 bp)
GTCTCTGTCACCATGCAGGATCCTC
LOC_Os08g33030
OsAffx.29482.3.S1_x_at--56--10132Chr04:22942529..22942549 (21 bp)
TATGCTGCTCCCATGGTGGCCTTCA
LOC_Os04g38990
OsAffx.29482.3.S1_x_at--456--8451Chr08:20358036..20358060 (25 bp)
TGGCCTTCATTCTCGCGTCTGAGGG
LOC_Os08g33030
OsAffx.29482.3.S1_x_at--39--5897Chr10:19042373..19042397 (25 bp)
GAGCGATCCCGTTGGGACAGTATCC
LOC_Os10g36229
OsAffx.29482.3.S1_x_at--374--8116Chr04:22942592..22942616 (25 bp)
GGACAGTATCCCAACGGGATACCGG
LOC_Os04g38990
OsAffx.29482.3.S1_x_at--616--7939Chr04:22942608..22942631 (24 bp)
GGATACCGGTATATAGCAGCTCCCA
LOC_Os04g38990
OsAffx.29482.3.S1_x_at--274--1754Chr04:22942612..22943073 (25 bp)
ACCGGTATATAGCAGCTCCCAAAAG
NONE
OsAffx.29482.3.S1_x_at--199--5051Chr08:20357955..20357979 (25 bp)
GCAGCTCCCAAAAGTAAAGCCCAAA
LOC_Os08g33030
Target Sequence 
CCCATGGTCCACATCGGAGCTCGTTGCCAGCGACCGCGTCCTCCGCCGGGACCTCGTCACTTGCGGTCACGTCCATCGTC
CACGCCTCAGTCGGTGGCTGCATCCTCCACGCCGGAGCTCGTCGCCGGTGCCGCCGCCATCACCACGCAGGATCCTCCGC
CGTGCACGCCCCACGCCGAAGCTCGTCGCCGGCGCCGTCTCTGTCACCATGCAGGATCCTCCGCCGTCCATGCGACCATG
CCCCATGCCGGAGCTCGCCAGTGGCCGCGTCCTCCACGCTGGAGCTCGTCGCCGGCAGCCGCGTCCTCCACGCCAGAGCT
CGGTGGCGGCGGTGGCGGTCGCGTCCGCGCCGCCGACGTCAGCCTCATCTATGCTGCTCCCATGGTGGCCTTCATTCTCG
CGTCTGAGGGAGGTGGACAGGGAGCGATCCCGTTGGGACAGTATCCCAACGGGATACCGGTATATAGCAGCTCCCAAAAG
TAAAGCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29482.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis