Browse Element(s) Details


OsAffx.29481.1.S1_at

Description tigr:9636.m03304
TID=OsAffx.29481.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3301011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein
LOC_Os08g33030OsAffx.29482.3.S1_x_at11/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.29482.5.S1_x_at4/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_x_at1/118+20357917..20360021hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29481.1.S1_at--606--451Chr08:20347970..20347994 (25 bp)
ATCTACCATGTCTACCAGCAGCCGT
LOC_Os08g33010
OsAffx.29481.1.S1_at--3--2731Chr08:20347922..20347946 (25 bp)
AAGCAGTGGCACTGGATCACCACCT
LOC_Os08g33010
OsAffx.29481.1.S1_at--847--3511Chr08:20347839..20347863 (25 bp)
CATGAACCTCCTAGGCGGGATCCAC
LOC_Os08g33010
OsAffx.29481.1.S1_at--165--6171Chr08:20347445..20347469 (25 bp)
GAGGTTGACGCATTTGCCAGAAGAC
LOC_Os08g33010
OsAffx.29481.1.S1_at--664--2551Chr08:20347410..20347434 (25 bp)
AACTGCGTACGGTTGGATTCCATGT
LOC_Os08g33010
OsAffx.29481.1.S1_at--367--331Chr08:20347385..20347409 (25 bp)
ATACAAGGTTGACTTCGACAGCCAA
LOC_Os08g33010
OsAffx.29481.1.S1_at--1162--2152Chr08:20347368..20347392 (25 bp)
ACAGCCAAGATGTCGTGCCTATCGA
LOC_Os08g33010
OsAffx.29481.1.S1_at--930--7191Chr08:20347357..20347381 (25 bp)
GTCGTGCCTATCGATTCCTTGGAAG
LOC_Os08g33010
OsAffx.29481.1.S1_at--180--8891Chr08:20347331..20347355 (25 bp)
TGAGGCATTGTTCATTGGGCATAAT
LOC_Os08g33010
OsAffx.29481.1.S1_at--27--8291Chr08:20347314..20347338 (25 bp)
GGCATAATGGCACCCTTTGTCTTTC
LOC_Os08g33010
OsAffx.29481.1.S1_at--826--10791Chr08:20347298..20347322 (25 bp)
TTGTCTTTCCACCAAGGATTACCCT
LOC_Os08g33010
Target Sequence 
ATCTACCATGTCTACCAGCAGCCGTCGTTCGCGAGGGTCGGGGACGACAAGCAGTGGCACTGGATCACCACCTCCTCCTA
CTACTGGTCTCCCTACTCCGACATCGCCTACCGCGACGGCGCCTTCTACGCCATGAACCTCCTAGGCGGGATCCACCGCT
ACGACATCCACCATTCCCGCGCCACGCGCACGGTGGTTCTCACCGACACGCTGGGGTACACGCTGCACCACGCGTACATG
GCCTGGACGCCGTCGTCGGGGGACGTCTGGAGGTTGACGCATTTGCCAGAAGACGAGGAGGAAGAACTGCGTACGGTTGG
ATTCCATGTATACAAGGTTGACTTCGACAGCCAAGATGTCGTGCCTATCGATTCCTTGGAAGATGAGGCATTGTTCATTG
GGCATAATGGCACCCTTTGTCTTTCCACCAAGGATTACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis