Browse Element(s) Details


Os.53996.1.S1_at

Description gb:AK101198.1
DB_XREF= gi:32986407
TID=Os.53996.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030L06, full insert sequence.
FL= gb:AK101198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3298011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53996.1.S1_at--88--4771Chr08:20329486..20329510 (25 bp)
GCTGCAGATCTAGAAATGTGAACAC
LOC_Os08g32980
Os.53996.1.S1_at--331--5491Chr08:20329467..20329491 (25 bp)
GAACACATATTGGATTCCTTCCCTA
LOC_Os08g32980
Os.53996.1.S1_at--296--2351Chr08:20329420..20329444 (25 bp)
AAAGCAGCTTCTCTGCATGAGGCTG
LOC_Os08g32980
Os.53996.1.S1_at--1065--691Chr08:20329404..20329428 (25 bp)
ATGAGGCTGCTCTTTTCGGATCTAT
LOC_Os08g32980
Os.53996.1.S1_at--691--10291Chr08:20329391..20329415 (25 bp)
TTTCGGATCTATTCTTTGCCAGGAC
LOC_Os08g32980
Os.53996.1.S1_at--32--7971Chr08:20329387..20329411 (25 bp)
GGATCTATTCTTTGCCAGGACATGG
LOC_Os08g32980
Os.53996.1.S1_at--1094--5651Chr08:20329369..20329393 (25 bp)
GACATGGCAATAGATTATTACCTCT
LOC_Os08g32980
Os.53996.1.S1_at--673--9971Chr08:20329351..20329375 (25 bp)
TACCTCTTAATTAACAAGCTGTCTG
LOC_Os08g32980
Os.53996.1.S1_at--482--4731Chr08:20329334..20329358 (25 bp)
GCTGTCTGCATCACCTGTACTAATG
LOC_Os08g32980
Os.53996.1.S1_at--312--391Chr08:20329325..20329349 (25 bp)
ATCACCTGTACTAATGTCCTGGCTG
LOC_Os08g32980
Os.53996.1.S1_at--1162--2951Chr08:20329313..20329337 (25 bp)
AATGTCCTGGCTGCTGCAGGTTGGC
LOC_Os08g32980
Target Sequence 
GCTGCAGATCTAGAAATGTGAACACATATTGGATTCCTTCCCTAAAAGGGGGCTATTGTTTTTGACAAAGCAGCTTCTCT
GCATGAGGCTGCTCTTTTCGGATCTATTCTTTGCCAGGACATGGCAATAGATTATTACCTCTTAATTAACAAGCTGTCTG
CATCACCTGTACTAATGTCCTGGCTGCTGCAGGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis