Browse Element(s) Details


Os.11277.1.S1_s_at

Description gb:AK059408.1
DB_XREF= gi:32969426
TID=Os.11277.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.13 (P0456B03.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C04, full insert sequence.
FL= gb:AK104119.1 gb:AK059408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3297011/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11277.1.S1_s_at--704--1851Chr08:20328337..20328361 (25 bp)
ACGACACGACGCTGATCAGGGTGGT
LOC_Os08g32970
Os.11277.1.S1_s_at--686--5651Chr08:20328381..20328405 (25 bp)
GACATGCAGTACATCAAGGCGGAGT
LOC_Os08g32970
Os.11277.1.S1_s_at--374--8031Chr08:20328401..20328425 (25 bp)
GGAGTACCACCGGAGCTACAAGCGC
LOC_Os08g32970
Os.11277.1.S1_s_at--633--8411Chr08:20328492..20328516 (25 bp)
GGCCGCGACCGCTAACGTCGATTGG
LOC_Os08g32970
Os.11277.1.S1_s_at--225--9811Chr08:20328504..20328528 (25 bp)
TAACGTCGATTGGTTTCGGTCTCTT
LOC_Os08g32970
Os.11277.1.S1_s_at--234--6611Chr08:20328511..20328535 (25 bp)
GATTGGTTTCGGTCTCTTTGAGCGT
LOC_Os08g32970
Os.11277.1.S1_s_at--898--9514Chr12:3294798..3294817 (20 bp)
TCTCTTTGAGCGTGTGTTAAGGGAC
NONE
Os.11277.1.S1_s_at--740--5791Chr08:20328545..20328569 (25 bp)
GACGCATTTGTTCCATAGCGCACAA
LOC_Os08g32970
Os.11277.1.S1_s_at--802--9991Chr08:20328560..20328584 (25 bp)
TAGCGCACAAACATGGCAATTATTT
LOC_Os08g32970
Os.11277.1.S1_s_at--221--3191Chr08:20328576..20328600 (25 bp)
CAATTATTTATGTGCGTGTGTAGTG
LOC_Os08g32970
Os.11277.1.S1_s_at--602--6911Chr08:20328595..20328619 (25 bp)
GTAGTGGTGTGTTCGAACGTTCGTT
LOC_Os08g32970
Target Sequence 
ACGACACGACGCTGATCAGGGTGGTGACGACGAGGGCGGAGGTGGACATGCAGTACATCAAGGCGGAGTACCACCGGAGC
TACAAGCGCTCGCTCGCCGACGCCGTCCACTCCGAGACCTCCGGCAACTACCGCACCTTCCTCCTCTCCCTCATCGGCCG
CGACCGCTAACGTCGATTGGTTTCGGTCTCTTTGAGCGTGTGTTAAGGGACGCATTTGTTCCATAGCGCACAAACATGGC
AATTATTTATGTGCGTGTGTAGTGGTGTGTTCGAACGTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11277.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis