Browse Element(s) Details


OsAffx.29480.1.S1_s_at

Description gb:NM_188966.1
DB_XREF= gi:34905015
GEN=P0456B03.16
TID=OsAffx.29480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0456B03.16 (P0456B03.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3299011/11RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os01g169703/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein
LOC_Os08g33030OsAffx.29482.3.S1_x_at11/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.29482.5.S1_x_at4/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_x_at1/118+20357917..20360021hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006351biological_processtranscription, DNA-dependent
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29480.1.S1_s_at--275--3651Chr08:20337453..20337477 (25 bp)
CTTAGTACACGTGCCTTGCAGATAA
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--1108--10411Chr08:20337611..20337735 (25 bp)
TTATCCACTTGAGGTGGAGGCGCTT
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--286--2471Chr08:20337782..20337806 (25 bp)
AACAACTGCTGTGTGAGTGCCCGAT
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--488--6111Chr08:20337796..20337820 (25 bp)
GAGTGCCCGATACTTGCTAACATTG
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--1035--9991Chr08:20338864..20338888 (25 bp)
TAGCTGCACATCATAATGGACATGG
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--831--5091Chr08:20338888..20338912 (25 bp)
GCACGAGCCATGAGAATCACACACA
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--169--7132Chr08:20338922..20339052 (25 bp)
GTCATCTGTTGAGCAGCATGATCCT
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--958--4971Chr08:20339043..20339067 (25 bp)
GCATGATCCTGAAAGCCAAGACGAC
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--346--2372Chr08:20339077..20339101 (25 bp)
AAAGCCACACCTGCTGATGAATCAC
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--798--5231Chr08:20339095..20339119 (25 bp)
GAATCACCACCGGAGGAGACATCTG
LOC_Os08g32990
OsAffx.29480.1.S1_s_at--975--5652Chr08:20339112..20339136 (25 bp)
GACATCTGCAGCACCTACTAAAGAG
LOC_Os08g32990
Target Sequence 
CTTAGTACACGTGCCTTGCAGATAAGCATGAATGCTCCTGTTATGGTCGAGCTTGAAGGGGGGACTTATCCACTTGAGGT
GGAGGCGCTTGAGCGGGTGTATACCGATTGCCCCAAGCCAACCTCCGCGCGCAGGCAACAACTGCTGTGTGAGTGCCCGA
TACTTGCTAACATTGAGCCGAAGCAGATCAAGGTAGCTGCACATCATAATGGACATGGCACGAGCCATGAGAATCACACA
CAAGAAAGTGAGTCATCTGTTGAGCAGCATGATCCTGAAAGCCAAGACGACATCAGCATAAAAGCCACACCTGCTGATGA
ATCACCACCGGAGGAGACATCTGCAGCACCTACTAAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29480.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis