Browse Element(s) Details


OsAffx.7986.1.S1_at

Description tigr:9638.m03219
TID=OsAffx.7986.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative valyl tRNA synthetase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3621010/11Valyl-tRNA synthetase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36170Os.46576.2.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36170Os.46576.1.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7986.1.S1_at--518--9811Chr10:19032189..19032213 (25 bp)
TAACGGAGGAGCTTTGGCAGCGCCT
LOC_Os10g36210
OsAffx.7986.1.S1_at--624--6511Chr10:19032253..19032277 (25 bp)
GATATCTGAGTACCCCTCAGTTGTT
LOC_Os10g36210
OsAffx.7986.1.S1_at--584--2691Chr10:19032620..19032644 (25 bp)
AAGCTAAGATCTCTTCGGCCACATA
LOC_Os10g36210
OsAffx.7986.1.S1_at--986--2331NONE
AAAGACGGCCTGCTTTTATGCTCTG
NONE
OsAffx.7986.1.S1_at--598--7691Chr10:19032830..19032854 (25 bp)
GGGTAGACATTGCTGCCATTATTCA
LOC_Os10g36210
OsAffx.7986.1.S1_at--77--171Chr10:19032847..19032871 (25 bp)
ATTATTCAGTGCTACCAGGCGCAGA
LOC_Os10g36210
OsAffx.7986.1.S1_at--548--3491Chr10:19032862..19032886 (25 bp)
CAGGCGCAGATTTCAACTCTTGCTT
LOC_Os10g36210
OsAffx.7986.1.S1_at--182--3631Chr10:19032880..19032903 (24 bp)
CTTGCTTCTGTTTCATCTCTTAAGA
LOC_Os10g36210
OsAffx.7986.1.S1_at--695--2331Chr10:19033197..19033221 (25 bp)
AAAGATCTATCCGTATACCTCCAGC
LOC_Os10g36210
OsAffx.7986.1.S1_at--202--5271Chr10:19033429..19033453 (25 bp)
GAATGCCTCAGGCTATCGCGAGAAG
LOC_Os10g36210
OsAffx.7986.1.S1_at--525--6591Chr10:19033489..19033513 (25 bp)
GATTGCTGCATTACTGGAGGAACTT
LOC_Os10g36210
Target Sequence 
TAACGGAGGAGCTTTGGCAGCGCCTTCCTCAGCCTAAAGAGGCTTGTAGGAAAGATTCCATAATGATATCTGAGTACCCC
TCAGTTGTTCAGGAATGGACAAATGATCAAGTTGAAAATGAAATGGAGACTGTGTTGGATTCTGTGAACAAGCTAAGATC
TCTTCGGCCACATACAGATATACATGAAAGACGGCCTGCTTTTATGCTCTGCCGTGGGGTAGACATTGCTGCCATTATTC
AGTGCTACCAGGCGCAGATTTCAACTCTTGCTTCTGTTTCATCTCTTAAGATACTGACAGAGGATGATCCAACTCCACCC
AACTGTGCCACAAATATTGTCAACAAAGATCTATCCGTATACCTCCAGCTACGAGGAGCTCTAAACACTGAAGCTGAGCG
TGAGAAGCTAAGGAAAAAGCGAGATGAGATTCAAAAGCAACACGACACCTTGTCGCAGAAAATGAATGCCTCAGGCTATC
GCGAGAAGGCTCCTCAGAGCAAGCAAGATGAGGACATGAAAAAGATTGCTGCATTACTGGAGGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis