Browse Element(s) Details


OsAffx.30689.1.S1_at

Description tigr:9638.m03238
TID=OsAffx.30689.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ascorbate oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g363909/11multi-copper oxidase type I family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36390OsAffx.30689.1.S1_at9/1110+19120091..19124912multi-copper oxidase type I family protein, putative
LOC_Os10g36400Os.10475.1.A1_at11/1110+19132688..19134422expressed protein
LOC_Os10g36410OsAffx.20214.1.S1_at8/1110+19134449..19138640hypothetical protein
LOC_Os10g36420OsAffx.20213.1.S1_at10/1110+19141658..19145613YABBY protein
LOC_Os10g36420Os.52395.1.S1_x_at1/1110+19141658..19145613YABBY protein

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Gene Ontology Classification
GO idTypeName
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30689.1.S1_at--481--9611Chr10:19123176..19123200 (25 bp)
TCATCTTCCAGAACAACGACACCAG
LOC_Os10g36390
OsAffx.30689.1.S1_at--1130--5631Chr10:19123193..19123217 (25 bp)
GACACCAGGATGCAGAGCTACCACA
LOC_Os10g36390
OsAffx.30689.1.S1_at--972--4851Chr10:19123209..19123233 (25 bp)
GCTACCACATGGACGGCTATGCCTT
LOC_Os10g36390
OsAffx.30689.1.S1_at--212--3651NONE
CTTCGTCGTCGGGATGGACTACGGC
NONE
OsAffx.30689.1.S1_at--543--3411NONE
CAGCACTGTGCAGGTGTACCCGGGA
NONE
OsAffx.30689.1.S1_at--98--4171Chr10:19124221..19124245 (25 bp)
CCCTGGACAACGTGGGCGTCTGGAA
LOC_Os10g36390
OsAffx.30689.1.S1_at--1101--5431Chr10:19124258..19124282 (25 bp)
GAACCTGGACTCATGGTACCTGGGC
LOC_Os10g36390
OsAffx.30689.1.S1_at--800--9951Chr10:19124274..19124298 (25 bp)
TACCTGGGCCAGGAGGTCTACGTCA
LOC_Os10g36390
OsAffx.30689.1.S1_at--597--2611Chr10:19124307..19124331 (25 bp)
AACCCTGAGGACACCGGCAACAAGA
LOC_Os10g36390
OsAffx.30689.1.S1_at--169--5151Chr10:19124323..19124347 (25 bp)
GCAACAAGACCGAGATGGCCATCCC
LOC_Os10g36390
OsAffx.30689.1.S1_at--835--9131Chr10:19124364..19124802 (25 bp)
TGCGGCCAGCTTCACAAGCAGCAGA
LOC_Os10g36390
Target Sequence 
TCATCTTCCAGAACAACGACACCAGGATGCAGAGCTACCACATGGACGGCTATGCCTTCTTCGTCGTCGGGATGGACTAC
GGCGAATGGACGGAGGATAGTAGGGGTACTTACAACAAGGGTGACGGCGTCGCCCGCAGCACTGTGCAGGTGTACCCGGG
AGCGTGGGCGGCGGTGCTGGTGTCCCTGGACAACGTGGGCGTCTGGAACGTGAGGTCGGAGAACCTGGACTCATGGTACC
TGGGCCAGGAGGTCTACGTCAGGGTCGTCAACCCTGAGGACACCGGCAACAAGACCGAGATGGCCATCCCCGACAACGCC
CTCTTCTGCGGCCAGCTTCACAAGCAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis