Browse Element(s) Details


Os.10475.1.A1_at

Description gb:AU077578
DB_XREF= gi:5667336
DB_XREF=AU077578
CLONE=C2786_1A
TID=Os.10475.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015K05.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36390OsAffx.30689.1.S1_at9/1110+19120091..19124912multi-copper oxidase type I family protein, putative
LOC_Os10g36400Os.10475.1.A1_at11/1110+19132688..19134422expressed protein
LOC_Os10g36410OsAffx.20214.1.S1_at8/1110+19134449..19138640hypothetical protein
LOC_Os10g36420OsAffx.20213.1.S1_at10/1110+19141658..19145613YABBY protein
LOC_Os10g36420Os.52395.1.S1_x_at1/1110+19141658..19145613YABBY protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10475.1.A1_at--958--8131Chr10:19133844..19133868 (25 bp)
GGACACTTCATAGATTGGCTTGGGC
LOC_Os10g36400
Os.10475.1.A1_at--237--31Chr10:19133857..19133881 (25 bp)
ATTGGCTTGGGCGTATGATCCGGCA
LOC_Os10g36400
Os.10475.1.A1_at--84--9291Chr10:19133875..19133899 (25 bp)
TCCGGCAGTCGGCATATTCCAGATT
LOC_Os10g36400
Os.10475.1.A1_at--505--3551Chr10:19133910..19133934 (25 bp)
CGGAGTACTCGGTGGTTTACATGGA
LOC_Os10g36400
Os.10475.1.A1_at--408--9131Chr10:19133988..19134012 (25 bp)
TGCGACCGAAGGTCGGTTTCACGGT
LOC_Os10g36400
Os.10475.1.A1_at--28--7771Chr10:19134040..19134064 (25 bp)
GGTGATCCAGTGTAGGGTGTACCTA
LOC_Os10g36400
Os.10475.1.A1_at--127--1751Chr10:19134184..19134208 (25 bp)
ACCTTCGGAGAGTCACAGTTGCTGC
LOC_Os10g36400
Os.10475.1.A1_at--139--3451Chr10:19134199..19134223 (25 bp)
CAGTTGCTGCTCGATGAGTAGTACA
LOC_Os10g36400
Os.10475.1.A1_at--1147--2331Chr10:19134265..19134289 (25 bp)
AAAGCGGGTTATTCGTGATTTGTAG
LOC_Os10g36400
Os.10475.1.A1_at--768--7411Chr10:19134289..19134313 (25 bp)
GTGTTGTACAAAGGCCATCAGATTC
LOC_Os10g36400
Os.10475.1.A1_at--733--6571Chr10:19134309..19134333 (25 bp)
GATTCTGAGAGCTGTGTTCTAACAT
LOC_Os10g36400
Target Sequence 
GGACACTTCATAGATTGGCTTGGGCGTATGATCCGGCAGTCGGCATATTCCAGATTGGCCAGGGAGCGGAGTACTCGGTG
GTTTACATGGAGAACATTGTGCGTTCAAAAGGATTTTCAGGAAGCAAGGAGCTCGGAAAGATGATGCGACCGAAGGTCGG
TTTCACGGTGGTGCCGGGATTTCGGCTCGGTGGGACGGTGATCCAGTGTAGGGTGTACCTAGATTGTGGCAAGAGGGAAG
GAATTATAGGTGAATGAAATAATATAGTCNAAAAAGAAACTGTACATTTGGAAAACNAAAGGAGGTTTGTGTAAAGGCGA
TCAAGAACAGTGCCNAAATAACCTTCGGAGAGTCACAGTTGCTGCTCGATGAGTAGTACAGAAATAGCTACTTATCTTTC
ATTTTAGTTTTGGTTTGGGTAAAAGCGGGTTATTCGTGATTTGTAGTGTTGTACAAAGGCCATCAGATTCTGAGAGCTGT
GTTCTAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10475.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis