Browse Element(s) Details


OsAffx.23804.2.S1_s_at

Description gb:NM_191384.1
DB_XREF= gi:34909851
GEN=OSJNBb0053G03.7
TID=OsAffx.23804.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0053G03.7 (OSJNBb0053G03.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5612011/11RNA recognition motif family protein
LOC_Os01g561101/11RNA-binding protein Musashi homolog 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein
LOC_Os01g56100Os.12255.1.S1_a_at11/111+32625741..32629883BSD domain containing protein, expressed
LOC_Os01g56110OsAffx.23804.1.S1_at11/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56110OsAffx.23804.2.S1_s_at1/111+32630547..32633485RNA-binding protein Musashi homolog 2, putative
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23804.2.S1_s_at--877--3532Chr01:32639610..32639634 (25 bp)
CATCCAGTTCGCGTCGGAGGAGTCC
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--292--5311Chr01:32639652..32639676 (25 bp)
GAAGGACAGGCACTTCCTCTATGGC
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--915--8553Chr01:32639684..32639708 (25 bp)
TGGAGGTGAGCCTTGCAATGCCCAA
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--161--5272Chr01:32639715..32639739 (25 bp)
GAATGCAACTTCTGGCACTAGCAAA
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--870--2572Chr01:32639769..32639793 (25 bp)
AACGACATCATCAAACTTTACCGCC
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--923--2571Chr01:32639809..32639833 (25 bp)
AACGTCGTTAATATTGTCCATGTGG
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--233--10751Chr01:32639847..32639871 (25 bp)
TTGTGTCGTCGGCAGTACTTTTAAC
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--270--8231Chr01:32639857..32639881 (25 bp)
GGCAGTACTTTTAACCCTCATATTG
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--788--3571Chr01:32639875..32639899 (25 bp)
CATATTGGCTTCGAGGTACCTGGGA
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--674--8811Chr01:32639925..32639949 (25 bp)
TGTTGTCACTGCTAATTACTCCTAC
LOC_Os01g56120
OsAffx.23804.2.S1_s_at--781--6951Chr01:32639952..32639976 (25 bp)
GTACCCCTACCTTGGAGGTGGTGAG
LOC_Os01g56120
Target Sequence 
CATCCAGTTCGCGTCGGAGGAGTCCGCAGCGAGGGCGCTCAAGAAGGACAGGCACTTCCTCTATGGCCAGTGGGTGGAGG
TGAGCCTTGCAATGCCCAAGCAGCAGAATGCAACTTCTGGCACTAGCAAATTGCCAGTTCAGGCTCACCCGTTTTATCCA
ACGACATCATCAAACTTTACCGCCGCCGCTAATTATCCCAACGTCGTTAATATTGTCCATGTGGTGACACCTATGAATTG
TGTCGTCGGCAGTACTTTTAACCCTCATATTGGCTTCGAGGTACCTGGGATGAAACTGAGTGATGGTGTGATCAATGTTG
TCACTGCTAATTACTCCTACCAGTACCCCTACCTTGGAGGTGGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23804.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis