Browse Element(s) Details


Os.56159.1.S1_at

Description gb:AK109493.1
DB_XREF= gi:32994702
TID=Os.56159.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.56159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E09, full insert sequence.
FL= gb:AK109493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5615011/11Serine carboxypeptidase S28 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56120OsAffx.23804.2.S1_s_at11/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.3.S1_at9/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56120OsAffx.23804.1.S1_at1/111+32635655..32640042RNA recognition motif family protein
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed
LOC_Os01g56160OsAffx.21600.1.S1_at11/111+32665178..32665936hypothetical protein
LOC_Os01g56170NANA1+32670773..32671687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005764cellular_componentlysosome
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56159.1.S1_at--403--3211Chr01:32662796..32662820 (25 bp)
CAAGGCCTCAATGGATTACTACAGA
LOC_Os01g56150
Os.56159.1.S1_at--509--10171Chr01:32662454..32662478 (25 bp)
TATCATATTCTTCAATGGGCTTCTG
LOC_Os01g56150
Os.56159.1.S1_at--954--10191Chr01:32662285..32662309 (25 bp)
TATATCTGAGAGTGTTGTGGCCATC
LOC_Os01g56150
Os.56159.1.S1_at--713--8451Chr01:32662271..32662292 (22 bp)
TGGCCATCATCGCTCCATTAGGAGC
LOC_Os01g56150
Os.56159.1.S1_at--883--931Chr01:32661902..32661926 (25 bp)
AGGACGACCCGGATTGGCTTGTTAG
LOC_Os01g56150
Os.56159.1.S1_at--817--2551Chr01:32661863..32661887 (25 bp)
AACTGGGCATCATATCGGGCTGGCT
LOC_Os01g56150
Os.56159.1.S1_at--626--1391Chr01:32661724..32661748 (25 bp)
AGACGCTGATTTTCGCAGCTGCATT
LOC_Os01g56150
Os.56159.1.S1_at--129--191Chr01:32661702..32661726 (25 bp)
ATTTCCCGTGTCTAACCAATAATGT
LOC_Os01g56150
Os.56159.1.S1_at--1150--351Chr01:32661684..32661708 (25 bp)
ATAATGTACCCAGTGCTGGTGCCTC
LOC_Os01g56150
Os.56159.1.S1_at--1020--2671Chr01:32661634..32661658 (25 bp)
AAGCTGGCCATGATGTCGCAGTAGT
LOC_Os01g56150
Os.56159.1.S1_at--80--6651Chr01:32661561..32661585 (25 bp)
GTTGTTCATGGACTGTTGCTGCCAA
LOC_Os01g56150
Target Sequence 
CAAGGCCTCAATGGATTACTACAGAGTTTGNTGGGCATAATATTAGTCTAGTTCTGGAGAGATTTGGTAGTAATATCATA
TTCTTCAATGGGCTTCTGGATCCTTGGAGTGGCGGAGGTGTCCTGAAGAATATATCTGAGAGTGTTGTGGCCATCATCGC
TCCATTAGGAGCTCATCACATCGATNTGCGCCCCGCGAGCAAGGACGACCCGGATTGGCTTGTTAGGCTGAGAGAATCAG
AACTGGGCATCATATCGGGCTGGCTCTCGGANTACTACGGTGCAAGAAGAGGGGCGCTCCNCCAGCGCGCCGCTCCCATC
CCATGGACTNTTNTGCACCATTCGTGACGATGATCGGCCGTGCGCTGCAACTCCCAACCAGACGCTGATTTTCGCAGCTG
CATTTCCCGTGTCTAACCAATAATGTACCCAGTGCTGGTGCCTCGCTCGCTGGACGGCTGGAGTTCTCCAAGCTGGCCAT
GATGTCGCAGTAGTAGTAGTACTAGTACNCCGTTGGTAAGGTAGGAGCAGAAGCTTTCNCCAGTTGTTCATGGACTGTTG
CTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis