Browse Element(s) Details


Os.20980.1.S1_at

Description gb:AK070672.1
DB_XREF= gi:32980696
TID=Os.20980.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0053G03.14 (OSJNBb0053G03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059I06, full insert sequence.
FL= gb:AK070672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5618011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56130Os.29016.1.S1_at11/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56130Os.14210.1.S1_at1/111+32645461..32649521glycosyl transferase family 2 protein, putative, expressed
LOC_Os01g56140Os.26362.1.S1_at11/111+32654651..32659625expressed protein
LOC_Os01g56150Os.56159.1.S1_at11/111+32661526..32664908Serine carboxypeptidase S28 family protein, expressed
LOC_Os01g56160OsAffx.21600.1.S1_at11/111+32665178..32665936hypothetical protein
LOC_Os01g56170NANA1+32670773..32671687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g56180Os.20980.1.S1_at11/111+32673737..32676981expressed protein
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20980.1.S1_at--258--4211Chr01:32676336..32676360 (25 bp)
CCCCTTCTGTCACTGAATGGGTCAG
LOC_Os01g56180
Os.20980.1.S1_at--76--6671Chr01:32676440..32676464 (25 bp)
GTTGAAGGCGCGAGCTTCTGCCCAA
LOC_Os01g56180
Os.20980.1.S1_at--586--3651Chr01:32676454..32676478 (25 bp)
CTTCTGCCCAAACGTACGTCAAGAT
LOC_Os01g56180
Os.20980.1.S1_at--958--5931Chr01:32676511..32676535 (25 bp)
GAGAGGTGAACTGGTCCAACTTCCC
LOC_Os01g56180
Os.20980.1.S1_at--874--7971Chr01:32676619..32676643 (25 bp)
GGATCGCGCAGGTGCAGCCTTTTGA
LOC_Os01g56180
Os.20980.1.S1_at--34--7331Chr01:32676669..32676693 (25 bp)
GTGCTCACCGGGAATGTGTCGATGT
LOC_Os01g56180
Os.20980.1.S1_at--1161--2751Chr01:32676696..32676720 (25 bp)
AAGACGGAGGTGGTTCATCCGCCGC
LOC_Os01g56180
Os.20980.1.S1_at--88--4491Chr01:32676719..32676743 (25 bp)
GCCGGTTTACTTCACTCTTTGAGAG
LOC_Os01g56180
Os.20980.1.S1_at--362--5011Chr01:32676743..32676767 (25 bp)
GCAGTTGAAGCTCCGGTTTTAAGTG
LOC_Os01g56180
Os.20980.1.S1_at--864--4591Chr01:32676793..32676817 (25 bp)
GCGAAAGTTTCTTGGCGGCGAGTAT
LOC_Os01g56180
Os.20980.1.S1_at--939--7851Chr01:32676853..32676877 (25 bp)
GGTATGTTATACTGGCCAGCTTTGT
LOC_Os01g56180
Target Sequence 
CCCCTTCTGTCACTGAATGGGTCAGATGGCAGCCTGCAGGGGTTTGAGGAGTTGCTGGCCTCGGTTCTTGGAAAGAAGGC
AGGTGAGAAGGGGACGTTCAAGCTGTTGAAGGCGCGAGCTTCTGCCCAAACGTACGTCAAGATGGGGTTTGCGGTGGAGA
AGAGGATTGCTGACGGAGAGGTGAACTGGTCCAACTTCCCGGAGTGGAAGACGAAGCCCAAGAAGTTGAGGGCGCACTAC
GAGGTTCTTGCTCGTGTGGAGGGTGGCCAGGCGATCCCTGAAAGGATCGCGCAGGTGCAGCCTTTTGAGGCCGACGAGGC
CATGTCNCGAGAGCGTGCTCACCGGGAATGTGTCGATGTCGAAGACGGAGGTGGTTCATCCGCCGCCGGTTTACTTCACT
CTTTGAGAGCAGTTGAAGCTCCGGTTTTAAGTGAGCTGATCACGGTANATGACAAGCGGCGAAAGTTTCTTGGCGGCGAG
TATTATTAACTGCATTAGCATGAAAAATTGTTGTACGGGGTATGTTATACTGGCCAGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis