Browse Element(s) Details


Os.25486.1.S1_at

Description gb:AK103291.1
DB_XREF= gi:32988500
TID=Os.25486.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1143G03.2 (B1143G03.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124P21, full insert sequence.
FL= gb:AK103291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56190Os.22836.3.S1_x_at11/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_x_at9/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56190Os.22836.2.S1_at5/111+32677361..32687474RNA helicase A, putative, expressed
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25486.1.S1_at--306--6751Chr01:32708652..32708676 (25 bp)
GTTCATCTACTTGTTTTACCACATA
LOC_Os01g56230
Os.25486.1.S1_at--767--9891Chr01:32708337..32708651 (25 bp)
TACTTTCACATTGATCAGGTTAAGC
LOC_Os01g56230
Os.25486.1.S1_at--143--5211Chr01:32708387..32708411 (25 bp)
GAATTGCTCATAGGCGCATCTACAA
LOC_Os01g56230
Os.25486.1.S1_at--792--10291Chr01:32708356..32708380 (25 bp)
TTTCGTACAGTCACATACAACTACA
LOC_Os01g56230
Os.25486.1.S1_at--45--2031Chr01:32708337..32708361 (25 bp)
ACTACATATATTTTCTACGTTAAGC
LOC_Os01g56230
Os.25486.1.S1_at--292--1551Chr01:32708315..32708339 (25 bp)
AGCTTTATAGTGCAACTCATAGCGC
LOC_Os01g56230
Os.25486.1.S1_at--8--9611Chr01:32708299..32708323 (25 bp)
TCATAGCGCAAGCAAAAGATCCCTT
LOC_Os01g56230
Os.25486.1.S1_at--262--2811Chr01:32708284..32708308 (25 bp)
AAGATCCCTTGTACACATGTTGGAA
LOC_Os01g56230
Os.25486.1.S1_at--1104--6611Chr01:32708266..32708290 (25 bp)
GTTGGAAAAATCTCCTCAACATTGC
LOC_Os01g56230
Os.25486.1.S1_at--1026--251Chr01:32708197..32708221 (25 bp)
ATATGCACGTCTAGTTATGGCTGAG
LOC_Os01g56230
Os.25486.1.S1_at--383--6171Chr01:32708175..32708199 (25 bp)
GAGGATGCTTTTATCTGTGCACTAA
LOC_Os01g56230
Target Sequence 
GTTCATCTACTTGTTTTACCACATATACTTTCACATTGATCAGGTTAAGCAGATGCGCACCTTTAGCTGCATTCTGATAT
TCGCTGTGCCCACAATACTATTAGTGATGAACACAGTGTGGTTTGTCAAAATCTTGAGAGGTCTCAAGAAGACGCTAGCC
AAGAGGCAGTGAAGAGTGGTGAATTGCTCATAGGCGCATCTACAACNATCNTTTCGTACAGTCACATACAACTACATATA
TTTTCTACGTTAAGCTTTATAGTGCAACTCATAGCGCAAGCAAAAGATCCCTTGTACACATGTTGGAAAAATCTCCTCAA
CATTGCCGAAAATTTTTGTCNCTGTACGGTTCTACATTGTACATATATATATATGCACGTCTAGTTATGGCTGAGGATGC
TTTTATCTGTGCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis