Browse Element(s) Details


Os.49365.1.S1_at

Description gb:AK120202.1
DB_XREF= gi:37989825
TID=Os.49365.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037J18, full insert sequence.
FL= gb:AK120202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5627011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g359402/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49365.1.S1_at--260--671Chr01:32739368..32739392 (25 bp)
ATGAATCCTGAGTGGTCTGTGGTAA
LOC_Os01g56270
Os.49365.1.S1_at--909--3152Chr01:32739454..32739478 (25 bp)
AATTGAGCCATTCCATGTTTCACAC
LOC_Os01g56270
Os.49365.1.S1_at--677--9692Chr01:32739473..32739497 (25 bp)
TCACACCTTGGTGGAATGTCCAGTA
LOC_Os01g56270
Os.49365.1.S1_at--795--10472Chr01:32739623..32740020 (25 bp)
TTACTTCAAGTTTCAGGTCCATTAT
LOC_Os01g56270
Os.49365.1.S1_at--233--5052Chr01:32740027..32740051 (25 bp)
GCAGACGCAGTTACATTGGCAAGGT
LOC_Os01g56270
Os.49365.1.S1_at--385--7732Chr01:32740174..32740198 (25 bp)
GGTGTTACTGTTTCTTTCGGCAAGC
LOC_Os01g56270
Os.49365.1.S1_at--771--852Chr01:32740232..32740256 (25 bp)
ATGGCAGTTCTAGTCCAAGCAAACA
LOC_Os01g56270
Os.49365.1.S1_at--351--1212Chr01:32740259..32740283 (25 bp)
AGTTTAGGCCAGTCTTCAGTAGTCA
LOC_Os01g56270
Os.49365.1.S1_at--591--2232Chr01:32740324..32740348 (25 bp)
AAATTTGTTCGTGTGAGCTTTTCCT
LOC_Os01g56270
Os.49365.1.S1_at--269--1153Chr06:17020780..17020804 (25 bp)
AGTCCTGTAATCATGTCTGGGTTAT
NONE
Os.49365.1.S1_at--91--7893Chr06:17020799..17021073 (25 bp)
GGTTATGTGATCTCTCTAGCATCTT
NONE
Target Sequence 
ATGAATCCTGAGTGGTCTGTGGTAAGGAAGAACAAACCTAGAGATATATATGACATTGGTGAGGATGAATGGGCAGGTGA
CATAGAAATTGAGCCATTCCATGTTTCACACCTTGGTGGAATGTCCAGTAATGCAAACAATTACAAGCAATGGGTTAGAA
CAGATGTTGAAGGAACAACAGTAGATGTTGATAATAATGCTTTGAATAATGAAGGATAACAGAGGAAAATAGTTACTCTT
TCATGATTTATTTCATTACTTCAAGTTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGGTGGCATCGGG
GTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGCTGTCACTAAGCAACATATGGCAGTTCTAGTCCAAGCAAA
CATGAGTTTAGGCCAGTCTTCAGTAGTCAATAATAATTCCCAATGTAGTCTATCTGTATAGATTATTTTAAATTTGTTCG
TGTGAGCTTTTCCTTTTCTATTGCTATATTGATTAGTCCTGTAATCATGTCTGGGTTATGTGATCTCTCTAGCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis