Browse Element(s) Details


OsAffx.23808.2.S1_at

Description tigr:9629.m05506
TID=OsAffx.23808.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g562908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23808.2.S1_at--486--3431Chr01:32753229..32753332 (25 bp)
CAGATCTCTGAATGGCAGTCAGTTT
LOC_Os01g56290
OsAffx.23808.2.S1_at--781--1271Chr01:32753230..32753333 (25 bp)
AGATCTCTGAATGGCAGTCAGTTTT
LOC_Os01g56290
OsAffx.23808.2.S1_at--630--6411Chr01:32753231..32753334 (25 bp)
GATCTCTGAATGGCAGTCAGTTTTA
LOC_Os01g56290
OsAffx.23808.2.S1_at--234--451Chr01:32753232..32753335 (25 bp)
ATCTCTGAATGGCAGTCAGTTTTAA
LOC_Os01g56290
OsAffx.23808.2.S1_at--813--7751Chr01:32753406..32753567 (25 bp)
GGTGTTCCTTGCTGAAGAGGCCAAT
LOC_Os01g56290
OsAffx.23808.2.S1_at--1009--7411Chr01:32753407..32753568 (25 bp)
GTGTTCCTTGCTGAAGAGGCCAATG
LOC_Os01g56290
OsAffx.23808.2.S1_at--435--8811Chr01:32753408..32753569 (25 bp)
TGTTCCTTGCTGAAGAGGCCAATGT
LOC_Os01g56290
OsAffx.23808.2.S1_at--763--6691Chr01:32753409..32753570 (25 bp)
GTTCCTTGCTGAAGAGGCCAATGTT
LOC_Os01g56290
Target Sequence 
CAGATCTCTGAATGGCAGTCAGTTTTAACCACTGTGTTGGAGTTACCTCTTGATTTGGCCTTTTATGGACTGGCGAAGAA
ATTCCTAGTGGTTTTCTGGGTGTTCCTTGCTGAAGAGGCCAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23808.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis