Browse Element(s) Details


Os.14909.1.S1_at

Description gb:AK101446.1
DB_XREF= gi:32986655
TID=Os.14909.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin carboxyl terminal hydrolase (OSJNBa0050E08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039L17, full insert sequence.
FL= gb:AK101446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0727011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g563201/11subtilase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07248Os.41695.3.S1_x_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.15.S1_s_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.2.S1_x_at9/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.5.S1_x_at8/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.4.S1_x_at1/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004289molecular_functionsubtilase activity
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14909.1.S1_at--367--6571Chr10:3821460..3821484 (25 bp)
GATTCTCAGGTTGCTCCGAATGTTT
LOC_Os10g07270
Os.14909.1.S1_at--909--6651Chr10:3821451..3821475 (25 bp)
GTTGCTCCGAATGTTTCTCCTAAAC
LOC_Os10g07270
Os.14909.1.S1_at--357--5271Chr10:3821443..3821467 (25 bp)
GAATGTTTCTCCTAAACACTTCTTA
LOC_Os10g07270
Os.14909.1.S1_at--41--7171Chr10:3821413..3821437 (25 bp)
GTCTGTTAAATGGTGCTGACACTGA
LOC_Os10g07270
Os.14909.1.S1_at--806--4751Chr10:3821399..3821423 (25 bp)
GCTGACACTGAGTTTTGCACCTTTG
LOC_Os10g07270
Os.14909.1.S1_at--1107--1952Chr01:32778821..32778949 (25 bp)
ACTGAGTTTTGCACCTTTGTTCTGT
LOC_Os01g56320
Os.14909.1.S1_at--84--10272Chr10:3821378..3821402 (25 bp)
TTTGTTCTGTTTTGTAACTTCCATT
LOC_Os10g07270
Os.14909.1.S1_at--28--7051Chr10:3821365..3821389 (25 bp)
GTAACTTCCATTAATTAGTCGTACA
LOC_Os10g07270
Os.14909.1.S1_at--776--7191Chr10:3821348..3821372 (25 bp)
GTCGTACATTATAAACGTATTTCTT
LOC_Os10g07270
Os.14909.1.S1_at--391--1271Chr10:3821317..3821341 (25 bp)
AGATAACATGCTGTTGTGTCCCAGA
LOC_Os10g07270
Os.14909.1.S1_at--770--2491Chr10:3821313..3821337 (25 bp)
AACATGCTGTTGTGTCCCAGAACTA
LOC_Os10g07270
Target Sequence 
GATTCTCAGGTTGCTCCGAATGTTTCTCCTAAACACTTCTTATAAATGTCTGTTAAATGGTGCTGACACTGAGTTTTGCA
CCTTTGTTCTGTTTTGTAACTTCCATTAATTAGTCGTACATTATAAACGTATTTCTTACTTTAAGATAACATGCTGTTGT
GTCCCAGAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis