Browse Element(s) Details


Os.14909.2.S1_at

Description gb:AK111889.1
DB_XREF= gi:37988552
TID=Os.14909.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin carboxyl terminal hydrolase (OSJNBa0050E08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072M05, full insert sequence.
FL= gb:AK111889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0727011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07248Os.41695.3.S1_x_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.15.S1_s_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.2.S1_x_at9/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.5.S1_x_at8/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.4.S1_x_at1/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14909.2.S1_at--242--211Chr10:3816095..3816119 (25 bp)
ATTTGCTGGTTTTGGGCACTGAGTA
LOC_Os10g07270
Os.14909.2.S1_at--490--6131Chr10:3816033..3816057 (25 bp)
GAGGGTGCAGCATCTCGTTAGCATC
LOC_Os10g07270
Os.14909.2.S1_at--561--3551Chr10:3816023..3816047 (25 bp)
CATCTCGTTAGCATCATCTTCCAAT
LOC_Os10g07270
Os.14909.2.S1_at--147--8791Chr10:3815997..3816021 (25 bp)
TGTTACAACCATTCTCATGCAGATT
LOC_Os10g07270
Os.14909.2.S1_at--329--6551Chr10:3815976..3816000 (25 bp)
GATTAGGGCTTCCAATATCTCCTGT
LOC_Os10g07270
Os.14909.2.S1_at--719--9571Chr10:3815952..3815976 (25 bp)
TCTTGCCCTTTTAGCGAATCGTTGA
LOC_Os10g07270
Os.14909.2.S1_at--441--511Chr10:3815935..3815959 (25 bp)
ATCGTTGAAATGTTGCCGGCTATAT
LOC_Os10g07270
Os.14909.2.S1_at--1045--6671Chr10:3815924..3815948 (25 bp)
GTTGCCGGCTATATGTTTACTAAAA
LOC_Os10g07270
Os.14909.2.S1_at--252--9831Chr10:3815904..3815928 (25 bp)
TAAAACTTCCTTTGCCGATATGCTG
LOC_Os10g07270
Os.14909.2.S1_at--613--6271Chr10:3815880..3815904 (25 bp)
GATGTACAGCAGCAGGTCTTGTTAA
LOC_Os10g07270
Os.14909.2.S1_at--575--8591Chr10:3815812..3815836 (25 bp)
TGGTACTGCAACTAGCTGCGTCAGA
LOC_Os10g07270
Target Sequence 
ATTTGCTGGTTTTGGGCACTGAGTATTGGTTTATGGTAGGTCCATCCAACCGTGGAGGTTTTGAGGGTGCAGCATCTCGT
TAGCATCATCTTCCAATATGTTACAACCATTCTCATGCAGATTAGGGCTTCCAATATCTCCTGTCTTGCCCTTTTAGCGA
ATCGTTGAAATGTTGCCGGCTATATGTTTACTAAAACTTCCTTTGCCGATATGCTGATGTACAGCAGCAGGTCTTGTTAA
TTTACGTGATCTTATTGTTGTGGTTGGATGGGTGGTGGAAAATTGGTACTGCAACTAGCTGCGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14909.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis