Browse Element(s) Details


Os.47414.1.A1_s_at

Description gb:BX898065
DB_XREF= gi:40486638
DB_XREF=BX898065
CLONE=p683f01p3
TID=Os.47414.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47414 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0727011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07248Os.41695.3.S1_x_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.15.S1_s_at11/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.2.S1_x_at9/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.5.S1_x_at8/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07248Os.41695.4.S1_x_at1/1110+3795355..3807014transposon protein, putative, Mutator sub-class
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47414.1.A1_s_at--11--10731Chr10:3815758..3815782 (25 bp)
TTGCTTGCTGAGCTACATCTACTCA
LOC_Os10g07270
Os.47414.1.A1_s_at--360--9071Chr10:3815757..3815781 (25 bp)
TGCTTGCTGAGCTACATCTACTCAT
LOC_Os10g07270
Os.47414.1.A1_s_at--51--4931Chr10:3815756..3815780 (25 bp)
GCTTGCTGAGCTACATCTACTCATG
LOC_Os10g07270
Os.47414.1.A1_s_at--519--10711Chr10:3815754..3815778 (25 bp)
TTGCTGAGCTACATCTACTCATGTT
LOC_Os10g07270
Os.47414.1.A1_s_at--755--4751Chr10:3815752..3815776 (25 bp)
GCTGAGCTACATCTACTCATGTTCT
LOC_Os10g07270
Os.47414.1.A1_s_at--701--3731Chr10:3815746..3815770 (25 bp)
CTACATCTACTCATGTTCTTATTTT
LOC_Os10g07270
Os.47414.1.A1_s_at--62--451Chr10:3815742..3815766 (25 bp)
ATCTACTCATGTTCTTATTTTACTG
LOC_Os10g07270
Os.47414.1.A1_s_at--293--3731Chr10:3815740..3815764 (25 bp)
CTACTCATGTTCTTATTTTACTGGA
LOC_Os10g07270
Os.47414.1.A1_s_at--822--3751Chr10:3815737..3815761 (25 bp)
CTCATGTTCTTATTTTACTGGAATC
LOC_Os10g07270
Os.47414.1.A1_s_at--990--3491Chr10:3815735..3815759 (25 bp)
CATGTTCTTATTTTACTGGAATCAT
LOC_Os10g07270
Os.47414.1.A1_s_at--329--6731Chr10:3815732..3815756 (25 bp)
GTTCTTATTTTACTGGAATCATATC
LOC_Os10g07270
Target Sequence 
TTGCTTGCTGAGCTACATCTACTCATGTTCTTATTTTACTGGAATCATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47414.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis