Browse Element(s) Details


OsAffx.30329.1.S1_at

Description tigr:9638.m00649
TID=OsAffx.30329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0732011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA
LOC_Os10g07340Os.22675.1.S1_at11/1110+3852387..3855436expressed protein
LOC_Os10g07340Os.22675.1.S2_at10/1110+3852387..3855436expressed protein
LOC_Os10g07350OsAffx.18166.1.S1_at11/1110+3858087..3859531hypothetical protein
LOC_Os10g07370Os.25139.1.A1_at5/1110+3862435..3868801hypothetical protein
LOC_Os10g07370OsAffx.29612.1.S1_at1/1110+3862435..3868801hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30329.1.S1_at--870--3551Chr10:3847789..3847813 (25 bp)
CATCTACATTGGTGCTTAAGTCTTT
LOC_Os10g07320
OsAffx.30329.1.S1_at--659--31Chr10:3847796..3847820 (25 bp)
ATTGGTGCTTAAGTCTTTCCTTTCA
LOC_Os10g07320
OsAffx.30329.1.S1_at--262--7771Chr10:3847799..3847823 (25 bp)
GGTGCTTAAGTCTTTCCTTTCAGCG
LOC_Os10g07320
OsAffx.30329.1.S1_at--68--10511Chr10:3847804..3847828 (25 bp)
TTAAGTCTTTCCTTTCAGCGGCAAT
LOC_Os10g07320
OsAffx.30329.1.S1_at--126--2851Chr10:3847806..3847830 (25 bp)
AAGTCTTTCCTTTCAGCGGCAATAT
LOC_Os10g07320
OsAffx.30329.1.S1_at--49--7151Chr10:3847808..3847832 (25 bp)
GTCTTTCCTTTCAGCGGCAATATGG
LOC_Os10g07320
OsAffx.30329.1.S1_at--508--9251Chr10:3847813..3847837 (25 bp)
TCCTTTCAGCGGCAATATGGTTGGT
LOC_Os10g07320
OsAffx.30329.1.S1_at--868--271Chr10:3847827..3847851 (25 bp)
ATATGGTTGGTGAAGAGCCCCTGCC
LOC_Os10g07320
OsAffx.30329.1.S1_at--873--8571Chr10:3847830..3847853 (24 bp)
TGGTTGGTGAAGAGCCCCTGCCATA
LOC_Os10g07320
OsAffx.30329.1.S1_at--392--8991Chr10:3847837..3848112 (25 bp)
TGAAGAGCCCCTGCCATATTTTTGC
LOC_Os10g07320
OsAffx.30329.1.S1_at--856--2771Chr10:3847839..3848114 (25 bp)
AAGAGCCCCTGCCATATTTTTGCCC
LOC_Os10g07320
Target Sequence 
CATCTACATTGGTGCTTAAGTCTTTCCTTTCAGCGGCAATATGGTTGGTGAAGAGCCCCTGCCATATTTTTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis