Browse Element(s) Details


OsAffx.4400.1.S1_x_at

Description tigr:9633.m02027
TID=OsAffx.4400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2300010/11hypothetical protein
LOC_Os10g073201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22960NANA5+13012976..13015005expressed protein
LOC_Os05g22970Os.11010.1.S1_at11/115+13016493..13021099Lactoylglutathione lyase, putative, expressed
LOC_Os05g22970OsAffx.14786.1.S1_s_at10/115+13016493..13021099Lactoylglutathione lyase, putative, expressed
LOC_Os05g22970OsAffx.14786.1.S1_at8/115+13016493..13021099Lactoylglutathione lyase, putative, expressed
LOC_Os05g22980NANA5+13022579..13024665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22990Os.52927.1.S1_at11/115+13028935..13038101expressed protein
LOC_Os05g23000OsAffx.4400.1.S1_at10/115+13038997..13039412hypothetical protein
LOC_Os05g23000OsAffx.4400.1.S1_x_at10/115+13038997..13039412hypothetical protein
LOC_Os05g23010Os.27691.1.S1_x_at1/115+13045762..13050326retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23020NANA5+13050579..13051478retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23030NANA5+13054231..13055300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23040NANA5+13061329..13061709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23050Os.52007.1.S1_at11/115+13062663..13065036expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4400.1.S1_x_at--21--10311Chr05:13039331..13039355 (25 bp)
TTTCCCGCTTTGCATCCTGCTTCAA
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--972--10731Chr05:13039322..13039346 (25 bp)
TTGCATCCTGCTTCAACACACCCTG
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--974--4271Chr05:13039301..13039325 (25 bp)
CCTGCCCTCATTGCTGTATCGGTGG
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--109--3831Chr05:13039300..13039324 (25 bp)
CTGCCCTCATTGCTGTATCGGTGGC
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--204--8771Chr05:13039287..13039311 (25 bp)
TGTATCGGTGGCGTCTTTGCCTCTG
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--690--10151Chr05:13039285..13039309 (25 bp)
TATCGGTGGCGTCTTTGCCTCTGCC
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--378--10291NONE
TTTGCCTCTGCCTCAAAATTTTTGC
NONE
OsAffx.4400.1.S1_x_at--103--10691Chr05:13039050..13039295 (25 bp)
TTGCCTCTGCCTCAAAATTTTTGCC
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--1047--3751Chr05:13039046..13039291 (25 bp)
CTCTGCCTCAAAATTTTTGCCCCTA
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--18--3831Chr05:13039044..13039289 (25 bp)
CTGCCTCAAAATTTTTGCCCCTACA
LOC_Os05g23000
OsAffx.4400.1.S1_x_at--626--3114Chr10:3848105..3848128 (24 bp)
AATTTTTGCCCCTACAATTATGCGC
LOC_Os10g07320
Target Sequence 
TTTCCCGCTTTGCATCCTGCTTCAACACACCCTGCCCTCATTGCTGTATCGGTGGCGTCTTTGCCTCTGCCTCAAAATTT
TTGCCCCTACAATTATGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4400.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis