Browse Element(s) Details


Os.53145.1.S1_at

Description gb:AK071004.1
DB_XREF= gi:32981027
TID=Os.53145.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076M04, full insert sequence.
FL= gb:AK071004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2965011/11CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os10g073292/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29600NANA6+16974086..16978325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29609NANA6+16980730..16981428NA
LOC_Os06g29620OsAffx.4962.1.S1_at11/116+16982851..16983159hypothetical protein
LOC_Os06g29630Os.10828.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_s_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630OsAffx.12779.1.A1_x_at1/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29640OsAffx.15666.1.S1_at11/116+16998917..16999911hypothetical protein
LOC_Os06g29650Os.53145.1.S1_at11/116+17002690..17009233CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os06g29660OsAffx.8864.1.S1_at8/116+17010286..17011694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29670OsAffx.15667.1.S1_at6/116+17019713..17020078hypothetical protein
LOC_Os06g29680NANA6+17028104..17028559hypothetical protein
LOC_Os06g29690OsAffx.27867.1.S1_s_at11/116+17034117..17035896Dynein light chain type 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006661biological_processphosphatidylinositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0003881molecular_functionCDP-diacylglycerol-inositol 3-phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53145.1.S1_at--17--4831Chr06:17003212..17003236 (25 bp)
GCTCATATGCTTTACATTAGGGTTT
LOC_Os06g29650
Os.53145.1.S1_at--627--10071Chr06:17003195..17003219 (25 bp)
TAGGGTTTAGCTAGCCCTGGTTAAT
LOC_Os06g29650
Os.53145.1.S1_at--1121--7851Chr06:17003144..17003168 (25 bp)
GGTTCACATATGTTGCTAAAAGCCT
LOC_Os06g29650
Os.53145.1.S1_at--828--5931Chr06:17003118..17003142 (25 bp)
GAGCAGGTGCTTATTGTAACATTCT
LOC_Os06g29650
Os.53145.1.S1_at--728--4071Chr06:17003020..17003044 (25 bp)
CGAGATGTCGACTACCACTAGAGTT
LOC_Os06g29650
Os.53145.1.S1_at--166--9991Chr06:17003008..17003032 (25 bp)
TACCACTAGAGTTGGGCACTTGTAG
LOC_Os06g29650
Os.53145.1.S1_at--128--10238Chr11:24765601..24765625 (25 bp)
TTTGGTTCCCGGTCAAGGTTGGATG
NONE
Os.53145.1.S1_at--410--86324Chr12:22187436..22187460 (25 bp)
TGGGATATGGCGGTCCAGTTTTTTG
NONE
Os.53145.1.S1_at--509--79913Chr11:24765761..24765785 (25 bp)
GGATGAGTGGTTGCAATCACCCTTT
NONE
Os.53145.1.S1_at--992--1799Chr06:26202490..26202513 (24 bp)
ACCCTTTCATTAGAGGTGGTGAGTC
NONE
Os.53145.1.S1_at--203--7491Chr06:17002714..17002738 (25 bp)
GTGGTGAGTCTACCCCTCCAAATTC
LOC_Os06g29650
Target Sequence 
GCTCATATGCTTTACATTAGGGTTTAGCTAGCCCTGGTTAATAGGAGATACATTATGCCCAAATTATAGGTTCACATATG
TTGCTAAAAGCCTAGAGCAGGTGCTTATTGTAACATTCTATTCTTTATTTAGAGTGTCTATTTATATGATTCTAGCAGTA
CTAATAGCGACACATTAATAAGAAGTGTGGATCGAGATGTCGACTACCACTAGAGTTGGGCACTTGTAGGATCGAGATGT
CGACTAGAGGGGAGGGGGGGGGGAGGGGTGAATAGGCAATTTAAAACTAAATGACACCTAATATAAAACTAAGGGTGTGT
TTGGTTCCCGGTCAAGGTTGGATGGGATATGGCGGTCCAGTTTTTTGTTTGGTGGAGTGAATATGGCGATCCAGTTTTTT
GTTTGGTTGTAGGGATGAAAGTTGATATGGTGATCCATTTTTTTGTTTGGTTGGGGGAGTGGGATGGATGAGTGGTTGCA
ATCACCCTTTCATTAGAGGTGGTGAGTCTACCCCTCCAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis