Browse Element(s) Details


Os.10828.1.S1_at

Description gb:AU056956
DB_XREF= gi:4715840
DB_XREF=AU056956
CLONE=S21016_2Z
TID=Os.10828.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10828 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48044 (A.thaliana) T48044 hypothetical protein T12C14.220 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2963011/11AC transposase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29600NANA6+16974086..16978325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29609NANA6+16980730..16981428NA
LOC_Os06g29620OsAffx.4962.1.S1_at11/116+16982851..16983159hypothetical protein
LOC_Os06g29630Os.10828.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_s_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630Os.51987.1.S1_at11/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29630OsAffx.12779.1.A1_x_at1/116+16990724..16993088AC transposase, putative, expressed
LOC_Os06g29640OsAffx.15666.1.S1_at11/116+16998917..16999911hypothetical protein
LOC_Os06g29650Os.53145.1.S1_at11/116+17002690..17009233CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os06g29660OsAffx.8864.1.S1_at8/116+17010286..17011694retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10828.1.S1_at--999--6991Chr06:16990812..16990836 (25 bp)
GTACTGAAATACTGATGGACTGACG
LOC_Os06g29630
Os.10828.1.S1_at--282--8951Chr06:16990808..16990832 (25 bp)
TGAAATACTGATGGACTGACGTGTC
LOC_Os06g29630
Os.10828.1.S1_at--850--2251Chr06:16990806..16990830 (25 bp)
AAATACTGATGGACTGACGTGTCAT
LOC_Os06g29630
Os.10828.1.S1_at--1092--311Chr06:16990804..16990828 (25 bp)
ATACTGATGGACTGACGTGTCATGT
LOC_Os06g29630
Os.10828.1.S1_at--362--1971Chr06:16990802..16990826 (25 bp)
ACTGATGGACTGACGTGTCATGTGT
LOC_Os06g29630
Os.10828.1.S1_at--1075--6231Chr06:16990799..16990823 (25 bp)
GATGGACTGACGTGTCATGTGTGTT
LOC_Os06g29630
Os.10828.1.S1_at--433--5731Chr06:16990795..16990819 (25 bp)
GACTGACGTGTCATGTGTGTTGCTG
LOC_Os06g29630
Os.10828.1.S1_at--863--1971Chr06:16990794..16990818 (25 bp)
ACTGACGTGTCATGTGTGTTGCTGT
LOC_Os06g29630
Os.10828.1.S1_at--1059--3851Chr06:16990793..16990817 (25 bp)
CTGACGTGTCATGTGTGTTGCTGTT
LOC_Os06g29630
Os.10828.1.S1_at--970--7371Chr06:16990766..16990790 (25 bp)
GTGATGATTAATGAACTATTGCTGT
LOC_Os06g29630
Os.10828.1.S1_at--434--9771Chr06:16990758..16990782 (25 bp)
TAATGAACTATTGCTGTTCTGTGAT
LOC_Os06g29630
Target Sequence 
GTACTGAAATACTGATGGACTGACGTGTCATGTGTGTTGCTGTTCTGTGATGATTAATGAACTATTGCTGTTCTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis