Browse Element(s) Details


OsAffx.30430.1.S1_s_at

Description gb:NM_195586.1
DB_XREF= gi:37532531
TID=OsAffx.30430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034E23.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1662011/11hypothetical protein
LOC_Os10g072901/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16560NANA10+7922720..7930781retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16570NANA10+7934395..7935108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16580OsAffx.18261.1.S1_s_at11/1110+7936472..7937843hypothetical protein
LOC_Os10g16580OsAffx.202.1.S1_at1/1110+7936472..7937843hypothetical protein
LOC_Os10g16589NANA10+7938931..7939202NA
LOC_Os10g16600NANA10+7943406..7950073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16610OsAffx.20566.1.S1_at10/1110+7952847..7953843hypothetical protein
LOC_Os10g16620OsAffx.30430.2.S1_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16620OsAffx.30430.1.S1_s_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16630NANA10+7959963..7960580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16640Os.7089.2.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16640Os.7089.1.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16650OsAffx.8319.1.S1_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16650OsAffx.8319.1.S1_x_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16660NANA10+7980816..7981264retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30430.1.S1_s_at--1042--4712Chr10:7955742..7955766 (25 bp)
GCTGGGCATCAACTACGCCGCGTCG
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--65--1831Chr10:7955756..7955780 (25 bp)
ACGCCGCGTCGGCAACAACTGTCGG
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--440--4651Chr10:7955761..7955785 (25 bp)
GCGTCGGCAACAACTGTCGGCAACG
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--167--2211Chr10:7955770..7955794 (25 bp)
ACAACTGTCGGCAACGGACGCGCTT
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--953--2571Chr10:7955782..7955806 (25 bp)
AACGGACGCGCTTCCGCAGCTCGAA
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--816--9171Chr10:7955935..7955959 (25 bp)
TGCCGCCGGGAGAGCGTGCTGCTGC
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--774--9171Chr10:7955999..7956023 (25 bp)
TGCCGCTGCTCTTGCTGCTAATGCC
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--309--9111Chr10:7956036..7956060 (25 bp)
TGCTGCCGTGGTTGCCGCTCATGTG
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--923--8131Chr10:7956062..7956086 (25 bp)
GGACAGCACAGGCATGGCCTCCTCA
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--834--871Chr10:7956075..7956099 (25 bp)
ATGGCCTCCTCAACCTGCAGCTTGA
LOC_Os10g16620
OsAffx.30430.1.S1_s_at--468--9711Chr10:7956084..7956108 (25 bp)
TCAACCTGCAGCTTGAGGGAGAGAG
LOC_Os10g16620
Target Sequence 
GCTGGGCATCAACTACGCCGCGTCGGCAACAACTGTCGGCAACGGACGCGCTTCCGCAGCTCGAACTCGACAAGCAGCCT
ACGCCAGCGCCACCCTCGTTGCGCTGCCGCCGGGAGAGCGTGCTGCTGCTGCTCTTGCTGCTGCCGCCGCTGTCGCTCTT
GCTGCTGCTGCCGCTGCTCTTGCTGCTAATGCCGCCGCTGCCGGCTGCTGCCGTGGTTGCCGCTCATGTGGGGACAGCAC
AGGCATGGCCTCCTCAACCTGCAGCTTGAGGGAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30430.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis