Browse Element(s) Details


OsAffx.20566.1.S1_at

Description tigr:9638.m01353
TID=OsAffx.20566.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1661010/11hypothetical protein
LOC_Os12g192501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16560NANA10+7922720..7930781retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16570NANA10+7934395..7935108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16580OsAffx.18261.1.S1_s_at11/1110+7936472..7937843hypothetical protein
LOC_Os10g16580OsAffx.202.1.S1_at1/1110+7936472..7937843hypothetical protein
LOC_Os10g16589NANA10+7938931..7939202NA
LOC_Os10g16600NANA10+7943406..7950073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16610OsAffx.20566.1.S1_at10/1110+7952847..7953843hypothetical protein
LOC_Os10g16620OsAffx.30430.2.S1_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16620OsAffx.30430.1.S1_s_at11/1110+7955595..7956131hypothetical protein
LOC_Os10g16630NANA10+7959963..7960580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16640Os.7089.2.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16640Os.7089.1.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16650OsAffx.8319.1.S1_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16650OsAffx.8319.1.S1_x_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20566.1.S1_at--297--591Chr10:7953786..7953810 (25 bp)
ATGCCGTTTCCTCGCCGCAACAGGA
LOC_Os10g16610
OsAffx.20566.1.S1_at--979--4152Chr12:11162420..11162449 (24 bp)
CGCCGCAACAGGAAGCCAACCATGG
LOC_Os12g19250
OsAffx.20566.1.S1_at--524--5411Chr10:7953763..7953787 (25 bp)
GAAGCCAACCATGGACAAGCAGTTC
LOC_Os10g16610
OsAffx.20566.1.S1_at--2--8151Chr10:7953751..7953775 (25 bp)
GGACAAGCAGTTCAGCCGATTTACT
LOC_Os10g16610
OsAffx.20566.1.S1_at--748--4491NONE
GCCGATTTACTGAGAGTGTTAAGCC
NONE
OsAffx.20566.1.S1_at--909--6111Chr10:7953117..7953141 (25 bp)
GAGTGTTAAGCCACGAGTCGTTCCT
LOC_Os10g16610
OsAffx.20566.1.S1_at--157--1871Chr10:7953105..7953129 (25 bp)
ACGAGTCGTTCCTTCGCAGAGAACT
LOC_Os10g16610
OsAffx.20566.1.S1_at--1111--4871Chr10:7953043..7953067 (25 bp)
GCTTCAAGACTATGGCCGAGAAGAT
LOC_Os10g16610
OsAffx.20566.1.S1_at--861--5612Chr10:7952990..7953014 (25 bp)
GACAACGTGCCCGTTGGGCCACAAG
LOC_Os10g16610
OsAffx.20566.1.S1_at--77--291Chr10:7952924..7952948 (25 bp)
ATCACCATGGCGCAAACTAACCCGT
LOC_Os10g16610
OsAffx.20566.1.S1_at--777--8451Chr10:7952917..7952941 (25 bp)
TGGCGCAAACTAACCCGTTCTGCGG
LOC_Os10g16610
Target Sequence 
ATGCCGTTTCCTCGCCGCAACAGGAAGCCAACCATGGACAAGCAGTTCAGCCGATTTACTGAGAGTGTTAAGCCACGAGT
CGTTCCTTCGCAGAGAACTCTACCGACAAAGAAACCAGCCATCCCAGCGCCACCGAGCTTCAAGACTATGGCCGAGAAGA
TCCTCCGCGAGTTCGCTGCCCCCTCAGCTGACAACGTGCCCGTTGGGCCACAAGTCAACTTAGGAGACACAAACTTCGAT
CTAAAGTCGAGCCTCATCACCATGGCGCAAACTAACCCGTTCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis