Browse Element(s) Details


OsAffx.202.1.S1_at

Description gb:NM_196231.1
DB_XREF= gi:37533821
TID=OsAffx.202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBb0091O09.13), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2447011/11retrotransposon protein, putative, unclassified
LOC_Os10g165801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24440NANA10+12203970..12206121transposon protein, putative, unclassified
LOC_Os10g24450OsAffx.30486.1.S1_at1/1110+12207357..12213990retrotransposon protein, putative, unclassified
LOC_Os10g24450OsAffx.20415.1.S1_at1/1110+12207357..12213990retrotransposon protein, putative, unclassified
LOC_Os10g24450Os.46311.1.A1_at1/1110+12207357..12213990retrotransposon protein, putative, unclassified
LOC_Os10g24460NANA10+12216703..12222601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24470OsAffx.202.1.S1_at11/1110+12229086..12231089retrotransposon protein, putative, unclassified
LOC_Os10g24480Os.10626.4.A1_s_at2/1110+12236726..12239787expressed protein
LOC_Os10g24480OsAffx.17756.1.S1_x_at2/1110+12236726..12239787expressed protein
LOC_Os10g24490NANA10+12240154..12241605retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24500NANA10+12244457..12244903hypothetical protein
LOC_Os10g24510NANA10+12249200..12253714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24520NANA10+12253969..12255950retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.202.1.S1_at--1088--6431Chr10:12229837..12229861 (25 bp)
GATCAGATCAGACTTAGAACACATG
LOC_Os10g24470
OsAffx.202.1.S1_at--645--9611Chr10:12229770..12229794 (25 bp)
TCATCTCAATTCCTTCGATCCATCA
LOC_Os10g24470
OsAffx.202.1.S1_at--228--691Chr10:12229731..12229755 (25 bp)
ATGACTGGCAAATCATTGATCCCAT
LOC_Os10g24470
OsAffx.202.1.S1_at--176--53Chr10:7937062..7937085 (24 bp)
ATTGATCCCATACATTGGCTCTTCC
LOC_Os10g16580
OsAffx.202.1.S1_at--17--1732Chr10:12229683..12229707 (25 bp)
ACCTACAACCTTGACGGAGAGCCGA
LOC_Os10g24470
OsAffx.202.1.S1_at--1034--5991Chr10:12229667..12229691 (25 bp)
GAGAGCCGACATCAGCGAATCAATT
LOC_Os10g24470
OsAffx.202.1.S1_at--712--5231Chr10:12229452..12229675 (25 bp)
GAATCAATTGATCCCGGCGAGACGT
LOC_Os10g24470
OsAffx.202.1.S1_at--801--31Chr10:12229446..12229669 (25 bp)
ATTGATCCCGGCGAGACGTCTTTTC
LOC_Os10g24470
OsAffx.202.1.S1_at--798--9551Chr10:12229428..12229452 (25 bp)
TCTTTTCCAATACGATGAGAAGGCT
LOC_Os10g24470
OsAffx.202.1.S1_at--832--9871Chr10:12229308..12229332 (25 bp)
TACTCCCAAGGAGGACCGATTTTGC
LOC_Os10g24470
OsAffx.202.1.S1_at--315--1771Chr10:12229237..12229261 (25 bp)
ACCGGCCTTTGACGCAATCGGACAA
LOC_Os10g24470
Target Sequence 
GATCAGATCAGACTTAGAACACATGTTCTTCCTCCTCTCTTCCACTATTTCAATCTCCCTCTCCATCTCATCTCAATTCC
TTCGATCCATCACCTTCAACCCACAAATGACTGGCAAATCATTGATCCCATACATTGGCTCTTCCTCCAATTCCACCTAC
AACCTTGACGGAGAGCCGACATCAGCGAATCAATTGATCCCGGCGAGACGTCTTTTCCAATACGATGAGAAGGCTGCTCC
GCCTCCCGCCGAACGGTATGTGGGCACCCTATACACCAAGGCAGCGGATGAGGTGCTCCACAAATACATCACACCCTCCG
CCACTCCATCTACTCCCAAGGAGGACCGATTTTGCATTCGGGGAGTGCAAACTCCCGACGGTGGGTATGGTAAAGGATTG
CACCGGCCTTTGACGCAATCGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis