Browse Element(s) Details


Os.46311.1.A1_at

Description gb:CB635708
DB_XREF= gi:29630699
DB_XREF=OSIIEb16F19.r
CLONE=OSIIEb16F19
TID=Os.46311.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.46311 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187781.1 (A.thaliana) putative dihydroneopterin aldolase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g244501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24410NANA10+12183906..12184378hypothetical protein
LOC_Os10g24420NANA10+12189522..12196194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24430OsAffx.20947.1.S1_x_at1/1110+12198381..12201140transposon protein, putative, unclassified
LOC_Os10g24440NANA10+12203970..12206121transposon protein, putative, unclassified
LOC_Os10g24450OsAffx.30486.1.S1_at1/1110+12207357..12213990retrotransposon protein, putative, unclassified
LOC_Os10g24450OsAffx.20415.1.S1_at1/1110+12207357..12213990retrotransposon protein, putative, unclassified
LOC_Os10g24450Os.46311.1.A1_at1/1110+12207357..12213990retrotransposon protein, putative, unclassified
LOC_Os10g24460NANA10+12216703..12222601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24470OsAffx.202.1.S1_at11/1110+12229086..12231089retrotransposon protein, putative, unclassified
LOC_Os10g24480Os.10626.4.A1_s_at2/1110+12236726..12239787expressed protein
LOC_Os10g24480OsAffx.17756.1.S1_x_at2/1110+12236726..12239787expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46311.1.A1_at--811--8131NONE
GGACATCTTAATCCATTTCCTTTTG
NONE
Os.46311.1.A1_at--829--9231Chr06:2813969..2813993 (25 bp)
TCCTTTTGGTGGTATTCGTAGCTGT
NONE
Os.46311.1.A1_at--903--9513Chr10:12140180..12140211 (24 bp)
TCTCATCCAAACTCTGCAGCAGGGT
NONE
Os.46311.1.A1_at--891--6791Chr06:2813891..2813915 (25 bp)
GTTATAATTTCTTCTTCTCCTGAGG
NONE
Os.46311.1.A1_at--396--6211NONE
GAGGCTTTACTACCAGAGATATGAC
NONE
Os.46311.1.A1_at--1151--291Chr06:2813844..2813868 (25 bp)
ATAGCTTCCTGCATTGGAGGTTTCC
NONE
Os.46311.1.A1_at--1011--7991Chr06:2813829..2813853 (25 bp)
GGAGGTTTCCTTGAGCTTCAAATAA
NONE
Os.46311.1.A1_at--175--9751NONE
TAATTCATGCCGCTGCTAGGTTATC
NONE
Os.46311.1.A1_at--180--9751Chr06:2813368..2813392 (25 bp)
TAATTCTACATCAACACGTGCCATT
NONE
Os.46311.1.A1_at--63--3011Chr06:2813154..2813178 (25 bp)
AATGACACCATTATCTGGCGCTAGA
NONE
Os.46311.1.A1_at--617--4811Chr06:2813023..2813047 (25 bp)
GCTCTAGTCATATGCTTCAAGGTAC
NONE
Target Sequence 
GGACATCTTAATCCATTTCCTTTTGGTGGTATTCGTAGCTGTGAAGACATACACTAGAATTATACAAAGTCTTCTCATCC
AAACTCTGCAGCAGGGTTATAATTTCTTCTTCTCCTGAGGCTTTACTACCAGAGATATGACAATAGCTTCCTGCATTGGA
GGTTTCCTTGAGCTTCAAATAATTCATGCCGCTGCTAGGTTATCTATGCATAATTCTACATCAACACGTGCCATTGACAT
TTGAAGAGTATGAAGTCTTCGACCAAAAAAAGAAGTGTTGGTAGAATAACATGAGCGGGAAGATATGGCGAGCAAAAAAA
ATATGGAAGAAAATGACACCATTATCTGGCGCTAGATAGCATTCGCCGCCCTCGTGTTTGATGTTGCTGAAGCAACCACC
TTAAGCAAGGATAATAGTAAACTACAAGTTTATATGGAGAAGGAAGACAAAAGAAAAGTACAAAAGCTAGCTCTAGTCAT
ATGCTTCAAGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46311.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis