Browse Element(s) Details


OsAffx.17756.1.S1_x_at

Description gb:NM_193273.1
DB_XREF= gi:34913629
GEN=B1166B08.13
TID=OsAffx.17756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1166B08.13 (B1166B08.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g356103/11hypothetical protein
LOC_Os10g244802/11expressed protein
LOC_Os04g492501/11UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os02g245401/11hypothetical protein
LOC_Os09g175001/11hypothetical protein
LOC_Os03g053601/11retrotransposon protein, putative, unclassified
LOC_Os12g427201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35580Os.37071.2.S1_a_at11/111+20008672..20013157expressed protein
LOC_Os01g35580OsAffx.3177.1.S1_at2/111+20008672..20013157expressed protein
LOC_Os01g35590OsAffx.23520.2.S1_s_at11/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.1.S1_at10/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.2.S1_at8/111+20016306..20019801hypothetical protein
LOC_Os01g35600Os.33878.1.S1_at2/111+20030003..20031908hypothetical protein
LOC_Os01g35610OsAffx.17756.3.S1_at8/111+20036915..20037289hypothetical protein
LOC_Os01g35610OsAffx.17756.1.S1_x_at3/111+20036915..20037289hypothetical protein
LOC_Os01g35620OsAffx.23521.1.S1_at11/111+20042316..20043107hypothetical protein
LOC_Os01g35630NANA1+20043699..20044118Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17756.1.S1_x_at--996--37322Chr11:13940088..13940112 (25 bp)
CTCACCGGAGGAGGCGGAATCGACA
NONE
OsAffx.17756.1.S1_x_at--1161--5118Chr12:13570364..13570388 (25 bp)
ATCGACAATGGCGACGGCGACCGGA
NONE
OsAffx.17756.1.S1_x_at--809--2597Chr06:15180824..15180846 (23 bp)
AACGACGACGATGTCGGCTGCGGCA
NONE
OsAffx.17756.1.S1_x_at--273--6711Chr01:20037136..20037160 (25 bp)
GTTCCCGTCGATCTGCTGCACGATA
LOC_Os01g35610
OsAffx.17756.1.S1_x_at--268--3832Chr05:14248212..14248234 (23 bp)
CTGCTGCACGATAGAGGATGAAATT
NONE
OsAffx.17756.1.S1_x_at--754--9834Chr04:3274261..3274530 (25 bp)
TAAATCCTCGGCATGATTTGCACAG
NONE
OsAffx.17756.1.S1_x_at--865--9253Chr04:3274265..3274534 (25 bp)
TCCTCGGCATGATTTGCACAGGGTG
NONE
OsAffx.17756.1.S1_x_at--321--2113Chr12:12692750..12692774 (25 bp)
ATTTGCACAGGGTGAGGACGAGCCA
NONE
OsAffx.17756.1.S1_x_at--162--9713Chr12:12692764..12692787 (24 bp)
AGGACGAGCCAGAGTGGCTGCCAAC
NONE
OsAffx.17756.1.S1_x_at--672--1331NONE
AGAGTGGCTGCCAACCATCGGCCGA
NONE
OsAffx.17756.1.S1_x_at--136--8331NONE
GGCTGCCAACCATCGGCCGAGCAGA
NONE
Target Sequence 
CTCACCGGAGGAGGCGGAATCGACAATGGCGACGGCGACCGGAGTGGTCGGAACGACGACGATGTCGGCTGCGGCAGCGC
TTGGAGCGCGCTCCGGAGTGCCGTGGGCACGACGGCGTTCCCGTCGATCTGCTGCACGATAGAGGATGAAATTAAAAGGA
TAAATCCTCGGCATGATTTGCACAGGGTGAGGACGAGCCAGAGTGGCTGCCAACCATCGGCCGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17756.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis