Browse Element(s) Details


OsAffx.23520.2.S1_s_at

Description tigr:9629.m03351
TID=OsAffx.23520.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3559011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35550NANA1+19994363..19995652retrotransposon protein, putative, unclassified
LOC_Os01g35560NANA1+19999370..20002862retrotransposon protein, putative, unclassified
LOC_Os01g35580Os.37071.2.S1_a_at11/111+20008672..20013157expressed protein
LOC_Os01g35580OsAffx.3177.1.S1_at2/111+20008672..20013157expressed protein
LOC_Os01g35590OsAffx.23520.2.S1_s_at11/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.1.S1_at10/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.2.S1_at8/111+20016306..20019801hypothetical protein
LOC_Os01g35600Os.33878.1.S1_at2/111+20030003..20031908hypothetical protein
LOC_Os01g35610OsAffx.17756.3.S1_at8/111+20036915..20037289hypothetical protein
LOC_Os01g35610OsAffx.17756.1.S1_x_at3/111+20036915..20037289hypothetical protein
LOC_Os01g35620OsAffx.23521.1.S1_at11/111+20042316..20043107hypothetical protein
LOC_Os01g35630NANA1+20043699..20044118Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23520.2.S1_s_at--253--4651Chr01:20017286..20017310 (25 bp)
GCGTCAACTCGGTGTGTCGCCACGC
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--1024--9411Chr01:20017294..20017318 (25 bp)
TCGGTGTGTCGCCACGCCCTGAACG
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--872--3531Chr01:20017349..20017373 (25 bp)
CATCCACAGTCCACCATCGGTCGAG
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--1155--951Chr01:20017404..20017428 (25 bp)
AGGACCAGGATACCCGAAGGAATCG
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--988--991Chr01:20017410..20017434 (25 bp)
AGGATACCCGAAGGAATCGAGCCAC
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--1117--5251Chr01:20017423..20017447 (25 bp)
GAATCGAGCCACATTGGATCTCAGG
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--918--1691Chr01:20017429..20017453 (25 bp)
AGCCACATTGGATCTCAGGAGGAGA
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--1113--8012Chr03:3664289..3664360 (24 bp)
GGAGGAGAATGCCATCTTCTTCCCC
NONE
OsAffx.23520.2.S1_s_at--1156--5952Chr03:13125282..13125306 (24 bp)
GAGAATGCCATCTTCTTCCCCGATT
NONE
OsAffx.23520.2.S1_s_at--70--9531Chr01:20017501..20017603 (25 bp)
TCTCACTCTCTGATCAAGGCCGGAG
LOC_Os01g35590
OsAffx.23520.2.S1_s_at--348--3771Chr01:20017217..20017608 (25 bp)
CTCTCTGATCAAGGCCGGAGAACGC
LOC_Os01g35590
Target Sequence 
GCGTCAACTCGGTGTGTCGCCACGCCCTGAACGCCGCCGCATCATCTTCACAACGTCGCCCGCCATCCACAGTCCACCAT
CGGTCGAGCCGCCTCGCCATCGTCTTCGCCAACGCCCAAGGACCAGGATACCCGAAGGAATCGAGCCACATTGGATCTCA
GGAGGAGAATGCCATCTTCTTCCCCGATTCCGGCCGCCGTCGCCATTTCTCTCTCTCTCACTCTCTGATCAAGGCCGGAG
AACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23520.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis