Browse Element(s) Details

OsAffx.17756.3.S1_at

Description

tigr:9637.m01493
TID=OsAffx.17756.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g17500	11/11	hypothetical protein
LOC_Os01g35610	8/11	hypothetical protein
LOC_Os02g24540	4/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g17470	NA	NA	9	+	10683368..10684351	retrotransposon protein, putative, unclassified
LOC_Os09g17480	OsAffx.32032.3.S1_at	11/11	9	+	10691695..10694418	hypothetical protein
LOC_Os09g17480	OsAffx.32032.4.S1_s_at	10/11	9	+	10691695..10694418	hypothetical protein
LOC_Os09g17490	Os.27435.1.S1_x_at	5/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	OsAffx.22421.1.S1_at	4/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	OsAffx.22421.2.S1_at	3/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	Os.51856.1.S2_x_at	3/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	Os.46334.1.S1_x_at	2/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	Os.51856.1.S2_at	2/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	Os.46334.1.S1_at	2/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490	Os.46985.1.S1_x_at	2/11	9	+	10695130..10702650	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17500	OsAffx.17756.3.S1_at	11/11	9	+	10705444..10705851	hypothetical protein
LOC_Os09g17500	OsAffx.17756.1.S1_x_at	1/11	9	+	10705444..10705851	hypothetical protein
LOC_Os09g17510	Os.40360.1.S1_x_at	1/11	9	+	10708899..10709978	hypothetical protein
LOC_Os09g17520	OsAffx.17757.1.S1_at	11/11	9	+	10717518..10724105	hypothetical protein
LOC_Os09g17520	OsAffx.22564.2.S1_at	1/11	9	+	10717518..10724105	hypothetical protein
LOC_Os09g17520	OsAffx.17424.1.S1_at	1/11	9	+	10717518..10724105	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.17756.3.S1_at--44--785	5	Chr04:3274033..3274057 (25 bp)	GGTAGCCGATCTCCGCACTTGCTGC	NONE
OsAffx.17756.3.S1_at--960--205	7	Chr06:15180743..15180937 (25 bp)	ACTTGCTGCGCCATTGCCTAGGATT	NONE
OsAffx.17756.3.S1_at--463--1071	6	Chr04:3274051..3274074 (24 bp)	TTGCTGCGCCATTGCCTAGGATTTG	NONE
OsAffx.17756.3.S1_at--876--915	5	Chr04:3274055..3274084 (25 bp)	TGCGCCATTGCCTAGGATTTGGTTT	NONE
OsAffx.17756.3.S1_at--951--359	3	Chr04:3274060..3274140 (25 bp)	CATTGCCTAGGATTTGGTTTGGTCT	NONE
OsAffx.17756.3.S1_at--489--919	3	Chr04:3274063..3274143 (25 bp)	TGCCTAGGATTTGGTTTGGTCTACA	NONE
OsAffx.17756.3.S1_at--910--429	2	Chr04:3274065..3274145 (25 bp)	CCTAGGATTTGGTTTGGTCTACAGT	NONE
OsAffx.17756.3.S1_at--664--793	2	Chr04:3274129..3274149 (21 bp)	GGATTTGGTTTGGTCTACAGTGGTC	NONE
OsAffx.17756.3.S1_at--1026--1083	3	Chr04:3274129..3274153 (25 bp)	TTGGTTTGGTCTACAGTGGTCGGAA	NONE
OsAffx.17756.3.S1_at--992--989	4	Chr04:3274133..3274157 (25 bp)	TTTGGTCTACAGTGGTCGGAACGAC	NONE
OsAffx.17756.3.S1_at--4--985	3	Chr04:3274261..3274308 (25 bp)	TAAATCCTCGGCATGTCGTCTTCTT	NONE

Target Sequence

GGTAGCCGATCTCCGCACTTGCTGCGCCATTGCCTAGGATTTGGTTTGGTCTACAGTGGTCGGAACGACGACGATGTCGG
CTGCGGCGGCGCTTGGAGCGCGCTCCGGAGTGCCGTGGGCACGACGGCGTTCCCGTCGATCCGCTGCACGATAGAGGATG
AAATTAAAAGGATAAATCCTCGGCATGTCGTCTTCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis