Browse Element(s) Details


OsAffx.17424.1.S1_at

Description tigr:9636.m04011
TID=OsAffx.17424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g396808/11expressed protein
LOC_Os12g179301/11hypothetical protein
LOC_Os09g175201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39630Os.5311.1.S1_at10/118+24956680..24959677Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g39640NANA8+24969322..24972773Cytochrome P450 family protein
LOC_Os08g39650NANA8+24974284..24976560retrotransposon protein, putative, unclassified
LOC_Os08g39660Os.15537.1.S1_at11/118+24976813..24978479Cytochrome P450 family protein, expressed
LOC_Os08g39670NANA8+24979909..24981853retrotransposon protein, putative, LINE subclass
LOC_Os08g39680OsAffx.17424.1.S1_at8/118+24983300..24988153expressed protein
LOC_Os08g39680OsAffx.23176.3.S1_x_at1/118+24983300..24988153expressed protein
LOC_Os08g39694Os.5661.1.S1_s_at11/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_x_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.54695.1.S1_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.52051.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.38269.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694OsAffx.855.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39710OsAffx.8275.1.S1_at7/118+25006012..25009317retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17424.1.S1_at--105--6171Chr08:24986615..24986639 (25 bp)
GAGGAGCACACCACCCGGCGGGAAA
LOC_Os08g39680
OsAffx.17424.1.S1_at--726--6171NONE
GAGGAGCGGCGCTGTGTCCAACACC
NONE
OsAffx.17424.1.S1_at--218--8719Chr11:13141912..13141933 (22 bp)
TGTCCAACACCGGAGCCAATATGTT
NONE
OsAffx.17424.1.S1_at--288--2524Chr11:21035852..21035876 (25 bp)
ATATCATTCCTACTCAACCACAGAG
NONE
OsAffx.17424.1.S1_at--736--6491NONE
GATATGGTTCTAGGAAGCTCTCAGG
NONE
OsAffx.17424.1.S1_at--153--1591Chr08:24984322..24984346 (25 bp)
AGCTCTCAGGGCTTTCACAGTGCAG
LOC_Os08g39680
OsAffx.17424.1.S1_at--674--3311Chr08:24984307..24984331 (25 bp)
CACAGTGCAGTGACGGGCCATTCAG
LOC_Os08g39680
OsAffx.17424.1.S1_at--964--5991Chr08:24984276..24984300 (25 bp)
GAGACCAGGTCGGAGATTCTCCTCC
LOC_Os08g39680
OsAffx.17424.1.S1_at--175--451Chr08:24984244..24984268 (25 bp)
ATCTTTGCGGTGCTTCCTGAAGAAC
LOC_Os08g39680
OsAffx.17424.1.S1_at--994--391NONE
ATCAGAAATTACAGCCTACAGGCGC
NONE
OsAffx.17424.1.S1_at--742--8491Chr08:24983350..24983374 (25 bp)
TGGCTATTCGGCTGTCGCTGTGATC
LOC_Os08g39680
Target Sequence 
GAGGAGCACACCACCCGGCGGGAAAGGAGGGAGAGGAGCGGCGCTGTGTCCAACACCGGAGCCAATATGTTGCCCTGAAA
ATTATTTGCAAATATGAGATAGATGGTGATTTGTCAAATACCATATCATTCCTACTCAACCACAGAGCCCAACATATGGC
AGATGCTCCTACAAATATGAGTTTACTCTTCTTCTTGTCAACCCTCAAAAGCCAACCATCAAACATATTAGATATGGTTC
TAGGAAGCTCTCAGGGCTTTCACAGTGCAGTGACGGGCCATTCAGCCTGGGGAGACCAGGTCGGAGATTCTCCTCCACAT
CGGATCTTTGCGGTGCTTCCTGAAGAACGGGGAGCTAAATGTTGTCAAGAGTCTCATCAGAAATTACAGCCTACAGGCGC
CGGCGTCTGCACATCCCGCCGCAAATACCGCCATGCCGGATGCCATGCCGCGCTGGCTCCTGGCTGGCTATTCGGCTGTC
GCTGTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis