Browse Element(s) Details


Os.5311.1.S1_at

Description gb:AK100106.1
DB_XREF= gi:32985315
TID=Os.5311.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5311 (NCBI UniGene Cluster)
UG_TITLE=Transcription factor RAU1 (rau1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004M08, full insert sequence.
FL= gb:AK100106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3963010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39600OsAffx.29601.1.S1_at11/118+24931797..24934063RNA methyltransferase, TrmH family protein, expressed
LOC_Os08g39610OsAffx.14360.2.A1_at11/118+24935027..24935338hypothetical protein
LOC_Os08g39620OsAffx.22940.2.S1_s_at11/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.1.S1_s_at11/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.3.S1_x_at9/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.5.S1_x_at4/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.2.S1_at4/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.22940.5.S1_at1/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39620OsAffx.31552.2.S1_at1/118+24937936..24943750transposon protein, putative, Mutator sub-class
LOC_Os08g39630Os.5311.1.S1_at10/118+24956680..24959677Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g39640NANA8+24969322..24972773Cytochrome P450 family protein
LOC_Os08g39650NANA8+24974284..24976560retrotransposon protein, putative, unclassified
LOC_Os08g39660Os.15537.1.S1_at11/118+24976813..24978479Cytochrome P450 family protein, expressed
LOC_Os08g39670NANA8+24979909..24981853retrotransposon protein, putative, LINE subclass
LOC_Os08g39680OsAffx.17424.1.S1_at8/118+24983300..24988153expressed protein
LOC_Os08g39680OsAffx.23176.3.S1_x_at1/118+24983300..24988153expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5311.1.S1_at--157--7671Chr08:24959113..24959137 (25 bp)
GGGATTAAACGACAGCCGAGCTAAC
LOC_Os08g39630
Os.5311.1.S1_at--143--9811Chr08:24959134..24959158 (25 bp)
TAACTGCACCTGCTCAGCGAAGCAT
LOC_Os08g39630
Os.5311.1.S1_at--684--5391Chr08:24959152..24959176 (25 bp)
GAAGCATCAGCAGTACTCTGGCTAG
LOC_Os08g39630
Os.5311.1.S1_at--556--2691Chr08:24959178..24959202 (25 bp)
AAGCTTTGTACAAGTCATGGAGACT
LOC_Os08g39630
Os.5311.1.S1_at--421--2311Chr08:24959320..24959344 (25 bp)
AAAGGCTCTTGTGTGCCAAAGCACT
LOC_Os08g39630
Os.5311.1.S1_at--16--8071Chr08:24959363..24959387 (25 bp)
GGAGCAGTGGCATCATCAGGATTCA
LOC_Os08g39630
Os.5311.1.S1_at--808--4171Chr08:24959492..24959516 (25 bp)
CCCATGTCCAGTGCATTTTCGATAG
LOC_Os08g39630
Os.5311.1.S1_at--309--9531Chr08:24959552..24959576 (25 bp)
TCTCATTTAACACCATGGCTCTCGC
LOC_Os08g39630
Os.5311.1.S1_at--669--4071Chr08:24959577..24959601 (25 bp)
CGACCTGCTCATCTCACTAATAAAT
LOC_Os08g39630
Os.5311.1.S1_at--920--10691Chr08:24959617..24959641 (25 bp)
TTGCCCCTTGCTTTTTTGCGGTCAA
LOC_Os08g39630
Os.5311.1.S1_at--228--10251NONE
TTTGCGGTCAAGTTGTTGCCAAGGA
NONE
Target Sequence 
GGGATTAAACGACAGCCGAGCTAACTGCACCTGCTCAGCGAAGCATCAGCAGTACTCTGGCTAGAAAGCTTTGTACAAGT
CATGGAGACTTCAGAAAAGAACACNAAGATTGTTTTGGAGATTAGGCAGGACTGAGACGATCTCTGAAGATGTGTAATGG
TTAATTTCATTTGTTTGGGGGGGTTTAATTAGAGAGGCACATGGAAGAAAAGGCTCTTGTGTGCCAAAGCACTGTATAAG
CAAAGGGCAATGGAGCAGTGGCATCATCAGGATTCAAGTGATAAAAANAAAAANNAAAAACAAGGGAGAAAAAGGGTGGG
AGATGGGTGAAACAATTGTATAGTTTTCTTGTAACTTTTGCCATATATACCCCTGCATGCCCCATGTCCAGTGCATTTTC
GATAGAAATTTATTACTGCNAGTAGTTTGTAGGTTAGTAGTCTCATTTAACACCATGGCTCTCGCCGACCTGCTCATCTC
ACTAATAAATATTATTGCAGTGGCTTTGCCCCTTGCTTTTTTGCGGTCAAGTTGTTGCCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis