Browse Element(s) Details


OsAffx.32032.3.S1_at

Description tigr:9637.m01491
TID=OsAffx.32032.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1748011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17450Os.27691.2.S1_x_at1/119+10665321..10671026retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17460NANA9+10678410..10678901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17470NANA9+10683368..10684351retrotransposon protein, putative, unclassified
LOC_Os09g17480OsAffx.32032.3.S1_at11/119+10691695..10694418hypothetical protein
LOC_Os09g17480OsAffx.32032.4.S1_s_at10/119+10691695..10694418hypothetical protein
LOC_Os09g17490Os.27435.1.S1_x_at5/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490OsAffx.22421.1.S1_at4/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490OsAffx.22421.2.S1_at3/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.51856.1.S2_x_at3/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.46334.1.S1_x_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.51856.1.S2_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.46334.1.S1_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.46985.1.S1_x_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17500OsAffx.17756.3.S1_at11/119+10705444..10705851hypothetical protein
LOC_Os09g17500OsAffx.17756.1.S1_x_at1/119+10705444..10705851hypothetical protein
LOC_Os09g17510Os.40360.1.S1_x_at1/119+10708899..10709978hypothetical protein
LOC_Os09g17520OsAffx.17757.1.S1_at11/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.22564.2.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.17424.1.S1_at1/119+10717518..10724105hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32032.3.S1_at--106--453Chr12:21309878..21309902 (25 bp)
ATCTTTTCTGCCTACACATATCACA
NONE
OsAffx.32032.3.S1_at--640--3311Chr09:10693769..10693793 (25 bp)
CACATATCACAGGACCAGATCAGGT
LOC_Os09g17480
OsAffx.32032.3.S1_at--560--3453Chr12:21309945..21309969 (25 bp)
CAGTATGTTGATTGCAATTGTTATA
NONE
OsAffx.32032.3.S1_at--750--2411Chr09:10693966..10693986 (21 bp)
AAAAAGTGAACTATCGGACTGCCAC
LOC_Os09g17480
OsAffx.32032.3.S1_at--480--9913Chr12:21310107..21310131 (25 bp)
TATCGCTTCCTTCTAAACCCATCAA
NONE
OsAffx.32032.3.S1_at--677--9834Chr12:21310120..21310144 (25 bp)
TAAACCCATCAATTCGTTCCTGTGT
NONE
OsAffx.32032.3.S1_at--1160--4174Chr12:21310124..21310148 (25 bp)
CCCATCAATTCGTTCCTGTGTAAAA
NONE
OsAffx.32032.3.S1_at--91--8671Chr09:10694020..10694044 (25 bp)
TGTGTAAAACCTTTTTCCAGCCGAT
LOC_Os09g17480
OsAffx.32032.3.S1_at--377--93Chr12:21310169..21310193 (25 bp)
ATTCCAGTGCTCCATACACTTGAGC
NONE
OsAffx.32032.3.S1_at--793--351Chr09:10694078..10694102 (25 bp)
ATAAGCCAGAAGACGGACAGCGATG
LOC_Os09g17480
OsAffx.32032.3.S1_at--908--4231Chr09:10694362..10694386 (25 bp)
CCGATGGCGCTGGATGTTATCTCAA
LOC_Os09g17480
Target Sequence 
ATCTTTTCTGCCTACACATATCACAGGACCAGATCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAGTATGTTGATT
GCAATTGTTATAAATAAGAACAATAAAAAAAAAAGTGAACTATCGGACTGCCACTATCGCTTCCTTCTAAACCCATCAAT
TCGTTCCTGTGTAAAACCTTTTTCCAGCCGATCCCCATTCCAGTGCTCCATACACTTGAGCATAAATAAGCCAGAAGACG
GACAGCGATGGAGGGAGCGGAGAAGGCGGCGAGGGCAGGGGAAACGACAGCGACGGAGGGGCGCGGAGAAGGTGACGCGG
CCAGGGGAGACGGACGGCGACGGAGGAGGCGAGGGCGGGGGAGGCGGACAGCGACGGAGGGGGTGGAGAAGGCGACGCGG
GCGGGGAAGACGGATGGCGACGGAGGAGGTGGAGAAGGTGGCGAGGCCGGGGGAGGCGACGACGCTGGAGAGGAAGGAGA
TGCCGATGGCGCTGGAGGGGAAGGAGATGCCGATGGCGCTGGATGTTATCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32032.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis