Browse Element(s) Details


OsAffx.17757.1.S1_at

Description tigr:9637.m01495
TID=OsAffx.17757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17480OsAffx.32032.3.S1_at11/119+10691695..10694418hypothetical protein
LOC_Os09g17480OsAffx.32032.4.S1_s_at10/119+10691695..10694418hypothetical protein
LOC_Os09g17490Os.27435.1.S1_x_at5/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490OsAffx.22421.1.S1_at4/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490OsAffx.22421.2.S1_at3/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.51856.1.S2_x_at3/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.46334.1.S1_x_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.51856.1.S2_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.46334.1.S1_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17490Os.46985.1.S1_x_at2/119+10695130..10702650transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17500OsAffx.17756.3.S1_at11/119+10705444..10705851hypothetical protein
LOC_Os09g17500OsAffx.17756.1.S1_x_at1/119+10705444..10705851hypothetical protein
LOC_Os09g17510Os.40360.1.S1_x_at1/119+10708899..10709978hypothetical protein
LOC_Os09g17520OsAffx.17757.1.S1_at11/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.22564.2.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17520OsAffx.17424.1.S1_at1/119+10717518..10724105hypothetical protein
LOC_Os09g17530Os.57392.1.S1_at2/119+10731282..10732352F-box domain containing protein
LOC_Os09g17540Os.54347.1.S1_at11/119+10732801..10734332F-box domain containing protein, expressed
LOC_Os09g17550OsAffx.29895.1.S1_at11/119+10737215..10737792hypothetical protein
LOC_Os09g17560Os.53458.1.S1_at11/119+10739342..10740907O-methyltransferase family protein, expressed
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17757.1.S1_at--1092--4911Chr09:10723061..10723085 (25 bp)
GCTTGCAGTCGCCTATTTGATTAAG
LOC_Os09g17520
OsAffx.17757.1.S1_at--240--4131Chr09:10723100..10723124 (25 bp)
CGCTGGTTTCCGTGATTCTAAGGGA
LOC_Os09g17520
OsAffx.17757.1.S1_at--93--251Chr09:10723165..10723189 (25 bp)
ATATAGTTGCGCATGCTTCCAGTAT
LOC_Os09g17520
OsAffx.17757.1.S1_at--161--3451Chr09:10723184..10723208 (25 bp)
CAGTATTCCATCTTTGGCCTGGATT
LOC_Os09g17520
OsAffx.17757.1.S1_at--1058--6931Chr09:10723248..10723272 (25 bp)
GTAGTAGTGCAGCTTGCGCATATCA
LOC_Os09g17520
OsAffx.17757.1.S1_at--286--2791Chr09:10723370..10723391 (22 bp)
AAGAGGGACTTTCTATGACTCGAAA
LOC_Os09g17520
OsAffx.17757.1.S1_at--843--3851Chr09:10723873..10723897 (25 bp)
CTGAACTACAGATTGCGAGGGCACT
LOC_Os09g17520
OsAffx.17757.1.S1_at--1122--651Chr09:10723909..10723933 (25 bp)
ATGCAAGTACTGGTCGTCGGATGGA
LOC_Os09g17520
OsAffx.17757.1.S1_at--588--3572Chr09:10723993..10724017 (25 bp)
CATATTCAACACAAACTCTGGGCGT
LOC_Os09g17520
OsAffx.17757.1.S1_at--85--6611Chr09:10724030..10724054 (25 bp)
GATTGTTACTGTCACACTTGGTGCA
LOC_Os09g17520
OsAffx.17757.1.S1_at--610--9011Chr09:10724051..10724075 (25 bp)
TGCAATCTTCGCCATACCTGGAGGT
LOC_Os09g17520
Target Sequence 
GCTTGCAGTCGCCTATTTGATTAAGGAGCGACCTGAGATCGCTGGTTTCCGTGATTCTAAGGGAAGGACTTTCCTTCATG
TTGCTGTTGAAAGGAAGAAGTCAGATATAGTTGCGCATGCTTCCAGTATTCCATCTTTGGCCTGGATTTTGAATTTGCAA
GACAATGATGGCAGCACAGCTATGCATGTAGTAGTGCAGCTTGCGCATATCAAAAGTTTTTGTTCTCTATTGAGGAACAC
GGAAGTAAAGTTAAACATACCAAACAATAAGGGGCAGAGTCCTTTGGATGTATCGCAGAGTAATATTCCAAGAGGGACTT
TCTATGACTCGAAAAATAACCCTGAACTACAGATTGCGAGGGCACTAATAGCATGCAATGCAAGTACTGGTCGTCGGATG
GATCTCTTTCTGGAACAACGACAAAAGCAATCAGATGAAAAGACGGAATCAGAGAAAATGACATATTCAACACAAACTCT
GGGCGTTGGGTCGGTGCTGATTGTTACTGTCACACTTGGTGCAATCTTCGCCATACCTGGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis