Browse Element(s) Details


Os.46985.1.S1_x_at

Description gb:NM_186945.1
DB_XREF= gi:34900975
GEN=P0046D03.8
TID=Os.46985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0046D03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0046D03.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g134302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g263002/11transposon protein, putative, unclassified
LOC_Os09g174902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g181201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g193301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13390OsAffx.22940.1.S1_s_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.3.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.18.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_s_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_at8/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.3.S1_x_at6/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46985.1.S1_x_at--808--551Chr07:9120994..9121018 (25 bp)
ATCCGTATCCCACTGGAACTTGCTA
NONE
Os.46985.1.S1_x_at--872--8511Chr07:9121007..9121031 (25 bp)
TGGAACTTGCTACTGTTGCCACTAT
NONE
Os.46985.1.S1_x_at--51--1973Chr07:9121018..9121042 (25 bp)
ACTGTTGCCACTATCTTATGGTAGT
NONE
Os.46985.1.S1_x_at--894--69317Chr12:21478426..21478450 (25 bp)
GTAGTGACATTGATAGCAAGTTCGA
NONE
Os.46985.1.S1_x_at--28--100311Chr12:21478439..21478463 (25 bp)
TAGCAAGTTCGAGTGGGATACTGAT
NONE
Os.46985.1.S1_x_at--236--4071Chr07:9121078..9121102 (25 bp)
CGAGGTCGAGTTCCCAGCTGCTCCA
NONE
Os.46985.1.S1_x_at--288--10651Chr07:9121088..9121112 (25 bp)
TTCCCAGCTGCTCCAGCCTTGTTGA
NONE
Os.46985.1.S1_x_at--388--4791Chr07:9121097..9121121 (25 bp)
GCTCCAGCCTTGTTGAGCATGGATG
NONE
Os.46985.1.S1_x_at--969--7971Chr07:9121117..9121141 (25 bp)
GGATGCTCGTGTTCCTTTGTCACAA
NONE
Os.46985.1.S1_x_at--762--7391Chr07:9121125..9121149 (25 bp)
GTGTTCCTTTGTCACAACCGGAAAT
NONE
Os.46985.1.S1_x_at--637--8714Chr08:7512317..7512682 (25 bp)
TGTCCCAGGAGGCAAGGCAGCTCAA
NONE
Target Sequence 
ATCCGTATCCCACTGGAACTTGCTACTGTTGCCACTATCTTATGGTAGTGACATTGATAGCAAGTTCGAGTGGGATACTG
ATGTCGAGGTCGAGTTCCCAGCTGCTCCAGCCTTGTTGAGCATGGATGCTCGTGTTCCTTTGTCACAACCGGAAATAACC
CAATGGGCATTCCTTACGTGCGTGTATTATTCCTTGTCCCAGGAGGCAAGGCAGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46985.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis