Browse Element(s) Details


Os.10093.3.S1_x_at

Description gb:AK101492.1
DB_XREF= gi:32986701
TID=Os.10093.3
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0565A07.26 (P0565A07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042P14, full insert sequence.
FL= gb:AK101492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1346011/11expressed protein
LOC_Os09g136001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0004534molecular_function5'-3' exoribonuclease activity
GO:0008409molecular_function5'-3' exonuclease activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10093.3.S1_x_at--43--7611Chr07:7716905..7716929 (25 bp)
GGGACTTTAGCATCTTACATGTTGG
LOC_Os07g13460
Os.10093.3.S1_x_at--889--2651Chr07:7717362..7717386 (25 bp)
AAGCCTATATTCTGCTGTTAGACAA
LOC_Os07g13460
Os.10093.3.S1_x_at--663--1951Chr07:7717857..7717881 (25 bp)
ACTGGGTCTTCGACACCACAGAGGA
LOC_Os07g13460
Os.10093.3.S1_x_at--971--2431Chr07:7718575..7718599 (25 bp)
AAAAGTCCCTGTTGCTACTGTGCAT
LOC_Os07g13460
Os.10093.3.S1_x_at--851--7332Chr07:7718594..7718618 (25 bp)
GTGCATGAAGATCTTTCCTCTGTGG
LOC_Os07g13460
Os.10093.3.S1_x_at--1104--8691Chr07:7718629..7718653 (25 bp)
TGTCCATTGCCCTCGGTGTTATAAA
LOC_Os07g13460
Os.10093.3.S1_x_at--548--10611Chr07:7718669..7718693 (25 bp)
TTCTGGTCTGGGTAATCTCCTAATG
LOC_Os07g13460
Os.10093.3.S1_x_at--3--5831Chr07:7718774..7718798 (25 bp)
GACCATTGAGGTCACTTCCATAAAC
LOC_Os07g13460
Os.10093.3.S1_x_at--109--2391Chr07:7718795..7718819 (25 bp)
AAACTTGGATCTGGGTGTGCAACAT
LOC_Os07g13460
Os.10093.3.S1_x_at--1107--2071Chr07:7718816..7718840 (25 bp)
ACATTTGTCAGTACACCATTGCCCT
LOC_Os07g13460
Os.10093.3.S1_x_at--1144--3571Chr07:7718633..7718657 (25 bp)
CATTGCCCTCGGTGTTATAAAGTTA
LOC_Os07g13460
Target Sequence 
GGGACTTTAGCATCTTACATGTTGGGTTTAGGGTTTAACATGACAATGTTAGGGGACCTATGAAGGGTGGAATCAGATAC
CGCCATGAGGATGGTGAAAAAAAGCCTATATTCTGCTGTTAGACAATTCATAATTAGGAATTTGATATNTNANGCCACCG
ACTGGGTCTTCGACACCACAGAGGACCGCGCCTGCCAAGCACAAAAGTCCCTGTTGCTACTGTGCATGAAGATCTTTCCT
CTGTGGCTCCTCCTCCTGTCCATTGCCCTCGGTGTTATAAAGTTACCATTTGATATTTCTGGTCTGGGTAATCTCCTAAT
GTAAGGTGTTAGTTTGTTCTATTATTCTATTCTCGATTATACAAGCTGTGGCTTTAAAGAAATAGCAGTAGATATGATAT
GGACCATTGAGGTCACTTCCATAAACTTGGATCTGGGTGTGCAACATTTGTCAGTACACCATTGCCCTCGGTGTTATAAA
GTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10093.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis