Browse Element(s) Details


Os.28865.1.S1_at

Description gb:AK110962.1
DB_XREF= gi:32996171
TID=Os.28865.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0583G08.9 (P0523A04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B01, full insert sequence.
FL= gb:AK110962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1352011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28865.1.S1_at--602--7711Chr07:7737987..7738011 (25 bp)
GGTGGCCCTTACATTGGAATCATTC
LOC_Os07g13520
Os.28865.1.S1_at--1158--5131Chr07:7737971..7737995 (25 bp)
GAATCATTCGGGTGTCCCTCCTATA
LOC_Os07g13520
Os.28865.1.S1_at--148--9311Chr07:7737957..7737981 (25 bp)
TCCCTCCTATACCACTTTATTGATG
LOC_Os07g13520
Os.28865.1.S1_at--1024--1431Chr07:7737885..7737909 (25 bp)
AGAACTGCTGCAGACGTCTGGCTGA
LOC_Os07g13520
Os.28865.1.S1_at--664--3852Chr12:18270651..18270814 (25 bp)
CTGATTGACGCTCTTGTTGCGGGAA
NONE
Os.28865.1.S1_at--1109--5311Chr07:7737842..7737866 (25 bp)
GAAGGGCCACGGACAATGATATCTG
LOC_Os07g13520
Os.28865.1.S1_at--1004--6451Chr07:7737729..7737753 (25 bp)
GATAACCATGCGCAGACTGGGCCAA
LOC_Os07g13520
Os.28865.1.S1_at--988--3031Chr07:7737624..7737648 (25 bp)
AATCCTTTGCCAGTGTATCCTATTA
LOC_Os07g13520
Os.28865.1.S1_at--183--2331Chr07:7737559..7737583 (25 bp)
AAAGTCCTTTGCCAGTGTATCCTAT
LOC_Os07g13520
Os.28865.1.S1_at--603--8091Chr07:7737458..7737482 (25 bp)
GGAGCCTACTAAATTTGTCACACTT
LOC_Os07g13520
Os.28865.1.S1_at--618--8731Chr07:7737443..7737467 (25 bp)
TGTCACACTTCACCTTACCAAATAG
LOC_Os07g13520
Target Sequence 
GGTGGCCCTTACATTGGAATCATTCGGGTGTCCCTCCTATACCACTTTATTGATGCCTCAGTTAATGATGAACTAGTCTA
TAGGTGGGTACCCCCTGAGTTGAGAACTGCTGCAGACGTCTGGCTGATTGACGCTCTTGTTGCGGGAAGGGCCACGGACA
ATGATATCTGTGATTTGATCAGTGAGACAAATGGTAACCACGTTATTGTCTGTTATGGTTACAGACATCGTGGAGGGGAG
CTACAGATTCTTATATTGGATAACCATGCGCAGACTGGGCCAAGTAGGTGGATCGGATTTGAGGAGCNGGAGAAAGTGTG
TGTACTGAGGGTAGATCCTCTCCCTCTGGATCTGGATCAACTTAATCCTTTGCCAGTGTATCCTATTAGTGGTTGTTAGG
CAGATAAATAAGTAGTTTGTATGATAAAAAAGTCCTTTGCCAGTGTATCCTATTAGTGGTTGTTAGGCGGATACATAAGT
AGTTTGTATGATAAAAAAGTTGTGTTTCAGTTGATTTTTGAACCTCTATGGAGCCTACTAAATTTGTCACACTTCACCTT
ACCAAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis