Browse Element(s) Details


OsAffx.10193.1.S1_at

Description tigr:9635.m01331
TID=OsAffx.10193.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1349010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10193.1.S1_at--491--5271Chr07:7729965..7729989 (25 bp)
GAATGCGATACAACAACACTCCTCC
LOC_Os07g13490
OsAffx.10193.1.S1_at--1099--8551Chr07:7729139..7729163 (25 bp)
TGGATGATCCCTCACGTCCAAAATG
LOC_Os07g13490
OsAffx.10193.1.S1_at--1023--131Chr07:7729109..7729129 (21 bp)
ATTACAATGCCAGACACCCGGGTGG
LOC_Os07g13490
OsAffx.10193.1.S1_at--257--2011NONE
ACACCCGGGTGGTGAGTTCGATGTA
NONE
OsAffx.10193.1.S1_at--778--6931Chr07:7728195..7728219 (25 bp)
GTAGTGAAACCCCTGATGCAAGCAA
LOC_Os07g13490
OsAffx.10193.1.S1_at--276--10631Chr07:7728090..7728114 (25 bp)
TTCGCTGAACTGCACTACAAGCCAT
LOC_Os07g13490
OsAffx.10193.1.S1_at--788--9791Chr07:7728056..7728080 (25 bp)
TAAGCGGATTTGTCAGCTGGGAGCA
LOC_Os07g13490
OsAffx.10193.1.S1_at--29--4291Chr07:7728012..7728036 (25 bp)
CCTGCTCCAGTTGCCATTGTTGAAA
LOC_Os07g13490
OsAffx.10193.1.S1_at--828--31Chr07:7727997..7728021 (25 bp)
ATTGTTGAAACATGCACCATCATTG
LOC_Os07g13490
OsAffx.10193.1.S1_at--531--7231Chr07:7727634..7727658 (25 bp)
GTCCGGCCGGGTTTGACATTTTGCA
LOC_Os07g13490
OsAffx.10193.1.S1_at--181--10691Chr07:7727622..7727646 (25 bp)
TTGACATTTTGCACCCCAAGGGCGA
LOC_Os07g13490
Target Sequence 
GAATGCGATACAACAACACTCCTCCGCCGTCTTCCACCAAGATTCGCCGCCAAGAGNNNGAGCGTGACACTTGGATGATC
CCTCACGTCCAAAATGCTCTCCGCCATTACAATGCCAGACACCCGGGTGGTGAGTTCGATGTAGTGAAACCCCTGATGCA
AGCAAGGGTGGTGTTCAAGGGGCAGCACTGGTTCCACATCAACTTCTGGGCTCGCAGCCGCAGCAGCAACAAGATCAAGC
GCTTCTTCGCTGAACTGCACTACAAGCCATTGATAACTATAAGCGGATTTGTCAGCTGGGAGCAGCTGCTGCCAGATCCA
CTCCCTGCTCCAGTTGCCATTGTTGAAACATGCACCATCATTGAANNNCCACTTGACCAGTACAAGAGAAGCTGCGCATT
TTGTCCGGCCGGGTTTGACATTTTGCACCCCAAGGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis